Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02435 ATGAATTATATGGCAGATGTTGTTTTGCTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCGATGTCCATTAGGGAGGAAGAAGAAGAGTCAAACGCAAGAATAGAGATAACGGTGCAAGGAATTGCAATGGAAAGTGATTACTCGGAATGCAGTTCAGCCGCTGACAGAAGTGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTTGTCTTACTCGTAAGACATTTTTTCGCAGTGCTTTCAAATGGAACGGAAGATTACCCATTTACACTACTTACTGTAATTATATTAAAGACTAGCGGAATCATTATACCTATGTACATAGTTATTAAGATTATTGGAGCCATTCAGAACAGTAGTCAGCATTATCAGGATTCTGACGATGACGACACATCAATGTCTGAAGATGAGATACAGCATAATGTAAATTTAAGACATTCATAG 660 0.3879 MNYMADVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNARIEITVQGIAMESDYSECSSAADRSASCCRSLAIAFTLVLLVRHFFAVLSNGTEDYPFTLLTVIILKTSGIIIPMYIVIKIIGAIQNSSQHYQDSDDDDTSMSEDEIQHNVNLRHS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02435 219 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 22 194 IPR033275 -
Phco2g02435 219 SMART ringv_2 22 71 IPR011016 GO:0008270
Phco2g02435 219 MobiDBLite consensus disorder prediction 195 219 - -
Phco2g02435 219 SUPERFAMILY RING/U-box 21 75 - -
Phco2g02435 219 FunFam E3 ubiquitin-protein ligase MARCH4 12 80 - -
Phco2g02435 219 Pfam RING-variant domain 23 70 IPR011016 GO:0008270
Phco2g02435 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 80 IPR013083 -
Phco2g02435 219 Pfam Protein of unknown function (DUF3675) 76 185 IPR022143 -
Phco2g02435 219 ProSiteProfiles Zinc finger RING-type profile. 23 70 IPR001841 -
Phco2g02435 219 ProSiteProfiles Zinc finger RING-CH-type profile. 15 77 IPR011016 GO:0008270
Phco2g02435 219 CDD RING_CH-C4HC3_MARCH 23 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02435 Phco-Chr2 54465114 54467063 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02435 2 54465114 54467063 Phco2g02435 2 54465114 54467063 ECH
Phco2g02435 2 54465114 54467063 Phco6g01466 6 15262190 15264740 PCT