Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01426 ATGGGGCTGTCCTTCACCAAGTTGTTCAGCCGGCTGTTTGCCAAGAAAGAGATGCGTATACTTATGGTGGGTCTCGATGCTGCGGGTAAGACCACCATTCTGTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCCACCATTGGGTTTAATGTGGAAACTGTGGAATATAAGAACATCAGCTTCACTGTTTGGGATGTAGGGGGCCAGGACAAGATCCGCCCGTTGTGGAGACATTACTTCCAAAATACCCAAGGACTTATCTTTGTGGTTGATAGCAATGACAGGGACCGAGTTGTTGAAGCTAGGGATGAGCTGCATAGAATGCTGAATGAGGATGAGTTGAGAGATGCCGTGCTTCTAGTTTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCGGAGATTACTGATAAGCTTGGTCTTCATTCCCTCCGCCAGCGTCACTGGTATATCCAGAGCACATGCGCCACATCTGGTGAAGGGCTCTACGAAGGACTGGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG 546 0.4799 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01426 181 NCBIfam small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Phco6g01426 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Phco6g01426 181 FunFam ADP-ribosylation factor 1 1 181 - -
Phco6g01426 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Phco6g01426 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Phco6g01426 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Phco6g01426 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Phco6g01426 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Phco6g01426 181 SMART rab_sub_5 18 180 - -
Phco6g01426 181 Gene3D - 4 181 IPR027417 -
Phco6g01426 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Phco6g01426 181 SMART arf_sub_2 1 181 - -
Phco6g01426 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Phco6g01426 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 176 IPR024156 GO:0005525
Phco6g01426 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01426 Phco-Chr6 14482038 14484484 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01117 11 8331292 8337366 Phco6g01426 6 14482038 14484484 ECH
Phco6g01426 6 14482038 14484484 Phco6g01426 6 14482038 14484484 ECH
Phco2g02471 2 54756691 54758219 Phco6g01426 6 14482038 14484484 PCT