Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01117 ATGGAAGCTGATGCTACCACCACTTCACGGTTACCACTCGCCGACACAGACATCAACTGGGACAGGTTGGACAAAACCAAGTTCCACGTCATCGGTGCCATTTTGTTCACCGCTCAATCAGGCCTGCTTCATCCAACGGCGGTGGTCAAGACACGAATGCAAGTGGCGGGGTCGGAGTTATCGCACGTGCGAGGAACGTCGGTGCTGGCCCACATTCTGCGGAGCGACGGCGTTCCGGGAATCTTCAGAGGCTTCGGCACTTCCGCCATTGGTTCAATCCCCGGCAGGGTTCTGGCCCTCACATCTCTCGAGGTCTCCAAGGACATCATCCTGAAACACACGCAAGCCACTCGCATTCCAGAAGCTTCTCGTGTTGGCCTCGCTAACGCACTCGCCGGCATGATCTCTAACTTGGTTTCCTGCGTCTACTTCGTGCCCTTGGATGTGATTTGTCAGAGGTTGATGGTGCAGGGTCTTCCTGGGACAACTTTTTGTAGAGGGCCGTTTGATGTTGTTCGGAAAGTTGTGGAGGCCGAAGGGTTTCGTGGTTTGTATAGGGGTTTTGGATTAACAGCGATTACGCAGTCCCCTGCTTCTGCACTTTGGTGGGGTTCATATGCTGCCGCACAACACCTAATTTGGAGAAGTCTGGGCTACAAAGATGATACGGGTAAAAAACCTTCAGATGTGGAAATGGTTACAGTTCAGGCTAGTGCAGGGATGGTGGCTGGTGCTTGTTCATCTGTTATCACTACTCCCATAGATACTCTGAAAACACGTCTTCAGGTGATGGACAACTATGGTTCTGAAAGACCATCAGTACTGAAGACAGCAAAGATTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGGGGTTTTGGACCAAGATTTTTAAACATGTCACTTTATGGAACAACTATGATTGTTACTTATGAACTGATAAAGAGATTATCGGTTCAAACAAGTTTGAGTCCTTCAAGAACACTTGATTGGGGTTTTCCAGAGCATTATGGTATTATTCATGCTTCATCTTCGTCAAAAATACACGCTGAACTAAAATGGCTAAAGTCTTTCTGCATCCTTAAACTTGACAATATGGGTTTGTCTTTTGGCAAGATTTTCTCTCGTCTATGCGCTAAGAAGGAGATGCGAATTCTCATGGTTGGTCTTGATGCTGCTGGTAAAACCACAATATTGTATAAACTGAAGTTAGGGGAGATTGTCACCACCATTCCTACTATTGGATTTAACGTGGAGACTGTGGAGTATAAGAACATTAGCTTCACTGTGTGGGATGTTGGTGGTCAAGATAAGATTCGACCCTTGTGGAGACACTACTTCCAAAACACACAAGGGCTTATTTTTGTGGTAGACAGCAATGATCGTGATCGTGTTGTTGAGGCTAAAGATGAGTTGCACAGGATGCTGAATGAGGATGAATTACGAGATGCTGTATTGCTTGTTTTTGCAAACAAGCAAGATCTTCCTAATGCAATGAACGCTGCTGAAATCACTGATAGGCTTGGTCTAAACTCTCTGCGCCAACGCCACTGGTATATCCAAAGTACATGTGCCACATCTGGTGAAGGTTTATATGAAGGACTAGACTGGCTTTCGAACAACATTTCAAGCAAGACTTCCTTTAAATAG 1653 0.4604 MEADATTTSRLPLADTDINWDRLDKTKFHVIGAILFTAQSGLLHPTAVVKTRMQVAGSELSHVRGTSVLAHILRSDGVPGIFRGFGTSAIGSIPGRVLALTSLEVSKDIILKHTQATRIPEASRVGLANALAGMISNLVSCVYFVPLDVICQRLMVQGLPGTTFCRGPFDVVRKVVEAEGFRGLYRGFGLTAITQSPASALWWGSYAAAQHLIWRSLGYKDDTGKKPSDVEMVTVQASAGMVAGACSSVITTPIDTLKTRLQVMDNYGSERPSVLKTAKILLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQTSLSPSRTLDWGFPEHYGIIHASSSSKIHAELKWLKSFCILKLDNMGLSFGKIFSRLCAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAKDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDRLGLNSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKTSFK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01117 550 Gene3D - 372 549 IPR027417 -
Phco11g01117 550 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 212 IPR018108 -
Phco11g01117 550 CDD Arf1_5_like 384 542 IPR045872 GO:0003924
Phco11g01117 550 SMART arf_sub_2 367 547 - -
Phco11g01117 550 FunFam ADP-ribosylation factor 1 367 547 - -
Phco11g01117 550 ProSiteProfiles small GTPase Arf family profile. 377 543 - -
Phco11g01117 550 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 322 - -
Phco11g01117 550 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 318 IPR018108 -
Phco11g01117 550 ProSiteProfiles Solute carrier (Solcar) repeat profile. 28 109 IPR018108 -
Phco11g01117 550 SMART sar_sub_1 367 543 IPR006689 GO:0003924|GO:0005525
Phco11g01117 550 Pfam ADP-ribosylation factor family 372 543 IPR006689 GO:0003924|GO:0005525
Phco11g01117 550 SUPERFAMILY Mitochondrial carrier 21 314 IPR023395 -
Phco11g01117 550 SMART rab_sub_5 384 517 - -
Phco11g01117 550 PRINTS GTP-binding SAR1 protein signature 440 465 IPR006689 GO:0003924|GO:0005525
Phco11g01117 550 PRINTS GTP-binding SAR1 protein signature 385 408 IPR006689 GO:0003924|GO:0005525
Phco11g01117 550 PRINTS GTP-binding SAR1 protein signature 485 506 IPR006689 GO:0003924|GO:0005525
Phco11g01117 550 PRINTS GTP-binding SAR1 protein signature 413 437 IPR006689 GO:0003924|GO:0005525
Phco11g01117 550 Gene3D Mitochondrial carrier domain 121 325 IPR023395 -
Phco11g01117 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 544 IPR027417 -
Phco11g01117 550 Pfam Mitochondrial carrier protein 31 113 IPR018108 -
Phco11g01117 550 Pfam Mitochondrial carrier protein 235 319 IPR018108 -
Phco11g01117 550 Pfam Mitochondrial carrier protein 128 214 IPR018108 -
Phco11g01117 550 NCBIfam small GTP-binding protein domain 382 509 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01117 Phco-Chr11 8331292 8337366 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01117 11 8331292 8337366 Phco11g01117 11 8331292 8337366 ECH
Phco11g01117 11 8331292 8337366 Phco6g01426 6 14482038 14484484 ECH