Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01382 ATGGAAGATGGAGTGAAATGCTTGAAAAGCAATGGAATCATCGGTGAAAAGCCCAAAACCGGATACCGTGATCATCTGATTAGAGTAGTTTCTTCAGAGCGATTCCTGTCTCAAAAATCATTGCTTGCTCTTGGTGGCTTTCTGGGTTGCTTCTCTTCTTCTTTGCCCCTTTCACCCCCTCTCTCTCTCCCTGCTCCTTTTTCATCACTAGGAGGATTTCAAATTGCTCATCGAGGGTGGCTCAAAAGCTCCGCCTCTGGTCAAAAGGGACAAGTGGATCTCACTCATATGAAGAGACTTTCAACTTTGGTGGGTGTTTTTTTGGTTCTTGCATCGTTCAGTTGTAGCCCATGGACAGTGTGGGGCAGCTCGTACTGCAATCGGATAAACTTGAAGGAAGTCCGGCCTCACAGTGTCAGTATTACCGAATTTGGGGCAGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCTGAGCTTTTTGTCCCCGCGGGCCAGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACACTGTGGTTGGACAACGATGCAGTAATTCTTGGTTCAACGAACTCTGAGGACTGGCCAATTGTGGAGCCTCTACCGTCATATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAGAAGCCTCATTTATGGGCGTAATTTGACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAGTTTCGGAACAAAACTTTGGATTATACACGTCCTCATTTGGTCGAGTTGATGAATTCAACCGGGGTTCTCATTTCAAATGTAACTTTCTTGAACTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTTACAATTCAAAATGTCACAGTCATTGCTCCTCATGGTTCACCAAATACAGATGGCATTAATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGTCGACCCAGTACAAATATTAACATCCGCAGGCTCATTGGGAAAACAACGAGTGCCGGGATTGCTATCGGAAGTGAGATGTCTGGAGGTGTCTCAGAAGTTCATGCAGAAGATATTTACATTTTTCATTCACGTAGTGCAGTTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGATCTTGGCTGATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCTGATGACCATTATGACCCAGAAGCTCTACCGGTAATTGAAAGGATTACTATCAAGGATGTGATTGGGGAAAAAGTCAAGCGTGCCGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCAATATCTGCCTATCAAACATCACACTTAATGTGACCTCGAAATTGCCATGGAACTGCTCTCACGTTAAAGGATATTCTGACCTGGTTTCACCGGAAGCCTGTGAGCCACTCAATGAGCGAATATCCCCTGAGCATTGTTCCGACTGTTGCTATGTACCAAACCACTTAACGAGTTTGGGAAATCAAAATCGGGGTGCTTGGGTTTAG 1677 0.4377 MEDGVKCLKSNGIIGEKPKTGYRDHLIRVVSSERFLSQKSLLALGGFLGCFSSSLPLSPPLSLPAPFSSLGGFQIAHRGWLKSSASGQKGQVDLTHMKRLSTLVGVFLVLASFSCSPWTVWGSSYCNRINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAELFVPAGQWLTGSFDLISHLTLWLDNDAVILGSTNSEDWPIVEPLPSYGRGRELPGGRHRSLIYGRNLTDVVITGNNGTIDGQGSIWWDKFRNKTLDYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTVIAPHGSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFHSRSAVRIKTSPGRGGYVRNVYISNMILADVDIAIRFTGLYGEHPDDHYDPEALPVIERITIKDVIGEKVKRAGLIQGIKGDNFVNICLSNITLNVTSKLPWNCSHVKGYSDLVSPEACEPLNERISPEHCSDCCYVPNHLTSLGNQNRGAWV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01382 558 PANTHER PECTIN LYASE-RELATED 118 539 - -
Phco6g01382 558 Pfam Glycosyl hydrolases family 28 234 513 IPR000743 GO:0004650|GO:0005975
Phco6g01382 558 Gene3D - 121 516 IPR012334 -
Phco6g01382 558 SMART pbh1 394 415 IPR006626 -
Phco6g01382 558 SMART pbh1 333 365 IPR006626 -
Phco6g01382 558 SMART pbh1 306 332 IPR006626 -
Phco6g01382 558 SMART pbh1 423 444 IPR006626 -
Phco6g01382 558 SMART pbh1 367 388 IPR006626 -
Phco6g01382 558 SUPERFAMILY Pectin lyase-like 132 526 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01382 Phco-Chr6 13917711 13921552 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01382 6 13917711 13921552 Phco6g01382 6 13917711 13921552 ECH
Phco2g02505 2 54972746 54975473 Phco6g01382 6 13917711 13921552 PCT