Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02505 ATGAGGAGACCTTCAACACTCGTGGATGTGCTTCTGGTACTTGCATTGCTCAGCTGTAGCCCATGGACAGTATGGAGCAACACACTTTGCCAAGAGACAAACGACGAAGTTCGACCTCACAGCGTCAGCATCACCGAATTTGGTGCTGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAAAATGCCATCTTCTACCTGAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCGGATGGTCGGTGGTTAACCGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCATCTTATGGAAGAGGAAGAGAGTTGCCAGGTAGAAGACATAAGAGTCTCATTTATGGGTGCAATTTGACTGATGTGATCATAACAGGTAATAACGGGACTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACACGTCCCCATTTGATAGAATTGATGAACTCAACGGGGGTCCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACACTCCATCCTGTGTATTGCAGCCATGTTACAGTTCAGAAAGTGGCGATCTTTGCTCCTCTTGATTCTCCAAATACTGATGGGATTGATCCAGATTCTTCAGACAATGTTTGCATTGAAGACTGTTACATAAGCACTGGTGATGACCTGATTGCGATCAAGAGCGGGTGGGATGAGTATGGCATTGGATACGGTCGCCCCTGCACAAACATTATCATCCACAGGCTTGTTGGTAAAACTCAAACGAGTGCAGGGATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTAGAAGATATTCAATTCTACGATTCATATACTGCAATCAGAATAAAGACGTCTCCTGGAAGGGGCGGTTATATTAGAAACATCTATGTCTCAAACGTGACCTTGGATAATGTGGATATTGCTATTAGGTTCACTGGTTTATATGGGGAACATCCAGATGATGCTTATGACCCAAATGCTCTGCCTGTAATAGAAAAGATTACAATCAAGGATGTGGTGGGAGAGAATATCAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACGTTTGCCTATCAAACATTGTCCTTAATGTGAGCTCAAACTATCCATGGAACTGCTCCTATGTTAAAGGATATTCTGACTTGGTTCTGCCAGAAGCTTGTGAGCCTCTCAAAGAAAGAATATTTCCTGAGCATTGTTCAGATTGTTACTATTTGTCAAATCAAATTCAGAGTTCGAAGAGCCAAAATAGAGGTGCTTGGTTTATGTCTTGGTAA 1398 0.4249 MRRPSTLVDVLLVLALLSCSPWTVWSNTLCQETNDEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPDGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGRRHKSLIYGCNLTDVIITGNNGTIDGQGSIWWSMFRNKTLDYTRPHLIELMNSTGVLISNLTFLNSPFWTLHPVYCSHVTVQKVAIFAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIGYGRPCTNIIIHRLVGKTQTSAGIAIGSEMSGGVSEVHVEDIQFYDSYTAIRIKTSPGRGGYIRNIYVSNVTLDNVDIAIRFTGLYGEHPDDAYDPNALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNVCLSNIVLNVSSNYPWNCSYVKGYSDLVLPEACEPLKERIFPEHCSDCYYLSNQIQSSKSQNRGAWFMSW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02505 465 SMART pbh1 209 235 IPR006626 -
Phco2g02505 465 SMART pbh1 298 319 IPR006626 -
Phco2g02505 465 SMART pbh1 327 348 IPR006626 -
Phco2g02505 465 SMART pbh1 270 292 IPR006626 -
Phco2g02505 465 SMART pbh1 236 268 IPR006626 -
Phco2g02505 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Phco2g02505 465 SUPERFAMILY Pectin lyase-like 34 431 IPR011050 -
Phco2g02505 465 PANTHER PECTIN LYASE-RELATED 22 449 - -
Phco2g02505 465 Gene3D - 25 418 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02505 Phco-Chr2 54972746 54975473 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02505 2 54972746 54975473 Phco6g01382 6 13917711 13921552 PCT