Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01374 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCTTCAATCACCAGCTGCAGGAACAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAACATAGTCAAGACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCCACTCAACATGTTGGCTCTTCCAGTTCAGGGGGGCCCTGGCAACCGATGCAGCCACATCTAAGTAGTTTTTCACAAGCTACTGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATTTGTTAGCTCATGATGGCTATCACGAGTTAGTAAAGACCCTCGAACAAATGTTTGACACTACCATTCTATGGGGAACTGAGATGGATGGAGTGCAACAAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGGGACGTTCCTTGGGAGATGTTCCTTTCAGCTGTAAAAAGGTTGAAGATCACAAGGGTTGAGACATTTGGGTGA 531 0.4539 MGKASSSSSSSITSCRNNPSNSTASSLTHQHSQDLRTDLRLGLSISATQHVGSSSSGGPWQPMQPHLSSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQQERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01374 176 SUPERFAMILY CAD & PB1 domains 80 170 - -
Phco6g01374 176 Gene3D - 78 175 - -
Phco6g01374 176 MobiDBLite consensus disorder prediction 1 31 - -
Phco6g01374 176 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Phco6g01374 176 Pfam AUX/IAA family 76 171 IPR033389 -
Phco6g01374 176 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Phco6g01374 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 172 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01374 Phco-Chr6 13870585 13871676 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco6g01374 AUX_IAA 7.5e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01374 6 13870585 13871676 Phco6g01374 6 13870585 13871676 ECH
Phco2g02508 2 55003098 55003984 Phco6g01374 6 13870585 13871676 PCT