Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02508 ATGGGAAAACACTCTAGTTCTTCTTCCTCCTCAATTAGCAGCAGCAGCAATAACCACCACCACCTTCTCATTTCAACTGCATCCTCTCTCACACAAGAACTTCCCACTGATCTTAGCCTTGGACTCAGCATTTCCGCCACTCATCATGTTGGCTCTTCTATTTCAAGGGGGCATTGGCAACAACAACACCACCCTCTTGTGAACATTTCACAAGCTGCTGAAGTGAATGATTGCAACGATCATAGCAGCTTGTTTGTGAAGGTCTACATGGAAGGGATTCCAATAGGAAGGAAGCTCAATATCCTTGCTCATGGAGGCTATTATGAGTTAGTGAAGACTCTTGAACACATGTTTGACACTACCATTCTCTGGGGGACAGAGATGAATGGAGTGCAACCTGAGAGATGCCATGTACTAACATACGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACAGTAAAGAGATTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA 531 0.4444 MGKHSSSSSSSISSSSNNHHHLLISTASSLTQELPTDLSLGLSISATHHVGSSISRGHWQQQHHPLVNISQAAEVNDCNDHSSLFVKVYMEGIPIGRKLNILAHGGYYELVKTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02508 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 72 171 IPR003311 GO:0005634|GO:0006355
Phco2g02508 176 SUPERFAMILY CAD & PB1 domains 79 168 - -
Phco2g02508 176 Gene3D - 77 175 - -
Phco2g02508 176 ProSiteProfiles PB1 domain profile. 83 173 IPR000270 GO:0005515
Phco2g02508 176 Pfam AUX/IAA family 71 170 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02508 Phco-Chr2 55003098 55003984 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco2g02508 AUX_IAA 2.8e-28 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02508 2 55003098 55003984 Phco6g01374 6 13870585 13871676 PCT