Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01350 ATGGGTCTAATTGGGAGGCGCGATGAAATCCGAGATGGAAGTTGTGGTGAGTTCGAAGAGGGAGTTTGGTTCCATGGAGAGGGAGGGGAGACATGGGTGTTGTTGCCCACTTCTCTTTTCTTTATTTTAACCCTTAGCTTCTGTTATCCTCATTGCTTCCTTCCTTTTCTTCTTCTCACTCTTTCCCTTTCAAGGGTCCAGTTCTATTCTAGCAGAGCAGAGAGATTGGCATTGTTTGGAGTGAAAATGTCTTCCTCAAGGCCCAGCCAATCGTCCAGCAATTCAGGGAGATCAAGACATAGTGCTAGGGTTCTTGCTCAAACAACTGTAGATGCAAAGCTCCATGCCACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCGGTTCGAGTCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGTCTGATAAAGTTACGACAGCTTACCTCCATCACATACAGAGAGGAAAGATGATTCAGCCTTTTGGATGCTTGTTGGCTTTAGATGAGAAAACATGTAAGGTCGTTGCATACAGTGAGAACGCTCCTGAAATGCTGACCATGGTTAGTCATGCTGTCCCCAGTGTTGGTGATCACCCTGCCCTTGGCATTGGCAGTGACATAAAAACTCTATTCACAGCACCTAGTGCTTCTGCATTGCAAAAGGCTCTAGGATTTGGGGAGGTTTCACTTCTTAATCCGATCCTTGTTCATTGCAAGACCTCTGGGAAGCCCTTTTATGCGATTATTCATCGTGTTACTGGCAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCTGGTGCCTTGCAGTCCTACAAGCTTGCTGCCAAAGCAATTACCCGGTTGCAATCTTTGCCTAGTGGGAGCATGGACAGATTATGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGCTATGACAGGGTGATGGCTTATAAATTCCATGAGGATGACCATGGCGAGGTGATTGCTGAGATAACAAAGCCAGGCCTTGAGCCATATTTGGGTTTGCATTATCCAGCCACTGATATTCCCCAAGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGAATGATAGTTGATTGTCATGCAAAACACGTGAAGGTTCTTCAAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCCACCTTGAGGGCTCCTCATAGTTGTCATGCTCAATACATGGCAAACATGGATTCAATTGCTTCCCTGGTCATGGCCGTTGTAGTCAATGACAACGAAGAAGATGGGGATACTGATGCTGTTCAGCCACAAAAGAGGAAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGGTTTGTTCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTGCGCACACAGACACTTTTGTGTGATATGCTGATGCGAGATGCACCCCTTGGAATTGTATCACAGAGCCCTAACATAATGGATCTAGTGAAATGTGATGGAGCAGCCCTCTTATATAAGAACAAGATATGGAGATTAGGAGTGACACCAAGTGAATCCCAGATCAGAGAGATTGCTTTGTGGTTGTCCGAGTACCATATGGATTCCACAGGCTTGAGTACGGATAGCTTGTGTGATGCAGGCTATCCATCGGCTCTTTCTATGGGTGATGTTGTGTGTGGAATGGCAGCTGTCAGAATAACTTCGAAAGACGTAGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAAATTGGAGAAAAAGATGATGGTAGGAGGATGCATCCGAGATCTTCATTCAAGGCTTTCCTTCAAGTCGTGAAGGCAAGGAGCTTGCCGTGGAAGGACTATGAAATGGATGCTATTCATTCCTTGCAGTTAATACTGAGAAATGCATTCAAAGATACTGAGAGTACAGATTTACAGACAAACGCAATCAATACAAAACTAAGTGATTTGAAGATCGAAGGGATGCAGGAACTGGAAGCAGTTACAAGCGAGATGGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTCGATGGGCTGGTCAACGGGTGGAACATAAAAGTTGCCGAGTTGACAGGTCTTCCAGTTGGTGAAGCTATTGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTGACTTGGCACTGCTAGGTGAAGAAGAGAAGAATGTTCAATTTGAGATCAAAACATTCGGGTCCAAGATGGATTCTGGTCCTATTAGTTTAGTAGTAAACGCTTGTGCAAGCAGGGATCTTCGAGAGAATGTTGTTGGTGTTTGCTTTGTGGCCCATGATATAACTGCTCAGAAGAATGTCATGGACAAATTCACCCGTATTGAAGGTGATTACAAAGCAATTGTACAGAACCCCAATCCATTAATCCCCCCTATTTTTGGCACAGACGAATTTGGTTGGTGTTGTGAGTGGAATCCAGCTATGTCAAAGTTAACTGGATGGAAGCGGGAGGAAGTGATGGATAAAATGCTTTTGGGAGAGGTTTTTGGCACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCCTTTGTTAATTTTGGCATCGTACTTAATAAAGCCATGACTGGCTCAGAAACAGAGAAGGTTGCTTTTGGTTTCTTGGCCCGGAATGGCAAGTATGTAGAGTGCCTACTCTCTGTGAGTAAGAAGTTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCGGAACTCCAGCAAGCACTACATATTCAGCGCCTATCTGAGCAGACCGCCTTGAAGAGATTGAATGCATTAACTTACATGAAAAGGCAGATAAGGAATCCTTTATGTGGAATTATATTTTCCCGGAAAATGTTGGAGGGTACTGAAATGGGAACAGAACAGAAACAGTTTCTGCATACTAGTGCTCAATGCCAGCTGCAGCTTAGCAAAATTCTTGATGACTCAGATCTTGACAGCATCTTAGACGGTTACTTGGATCTCGAGATGGCTGAATTTACTCTGCATGAAGTAATGATTGCCTCCCTTAGTCAAGTCATAACAAAGAGCAACGGAAAGAGTATCCGAATAGTGAATGACGTTGGAGAACAAATCGTAATGGAAACTTTATACGGTGACAGTCTTAGGCTTCAGCAGGTCTTGGCGGACTTCTTACTTATTTCCATCAATTTCACACCAAATGGAGGTCAGGTTGCTGTAGCAGGCTCTCTAACCAAAGAACAGTTAGGGAAATCGGTCCATCTTGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTGCCAGAAGCATTACTGAACCAGATGTTTGGAAATAATGGACTAGAGTCGGAGGAGGGTATGAGCCTACTGATCAGCAGAAAGCTGCTGAAGCTGATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGGAAATCAGCTTTTATCCTCTCTGCTGAACTTGCTGCTGCCCATAATTTGAAAGCTTAA 3618 0.44 MGLIGRRDEIRDGSCGEFEEGVWFHGEGGETWVLLPTSLFFILTLSFCYPHCFLPFLLLTLSLSRVQFYSSRAERLALFGVKMSSSRPSQSSSNSGRSRHSARVLAQTTVDAKLHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLHHIQRGKMIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDHPALGIGSDIKTLFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMDRLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGDTDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIWRLGVTPSESQIREIALWLSEYHMDSTGLSTDSLCDAGYPSALSMGDVVCGMAAVRITSKDVVFWFRSHTAAEIRWGGAKHEIGEKDDGRRMHPRSSFKAFLQVVKARSLPWKDYEMDAIHSLQLILRNAFKDTESTDLQTNAINTKLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKVAELTGLPVGEAIGKHLLTLVEDSSTDRVKKMLDLALLGEEEKNVQFEIKTFGSKMDSGPISLVVNACASRDLRENVVGVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMSKLTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGSETEKVAFGFLARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALTYMKRQIRNPLCGIIFSRKMLEGTEMGTEQKQFLHTSAQCQLQLSKILDDSDLDSILDGYLDLEMAEFTLHEVMIASLSQVITKSNGKSIRIVNDVGEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVAVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGMSLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKA 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01350 1205 Gene3D - 1017 1192 IPR036890 -
Phco6g01350 1205 SUPERFAMILY GAF domain-like 280 479 - -
Phco6g01350 1205 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1087 1195 IPR003594 -
Phco6g01350 1205 SMART HisKA_10 975 1040 IPR003661 GO:0000155|GO:0007165
Phco6g01350 1205 ProSiteProfiles PAS repeat profile. 698 768 IPR000014 -
Phco6g01350 1205 SUPERFAMILY GAF domain-like 490 668 - -
Phco6g01350 1205 NCBIfam PAS domain S-box protein 705 821 IPR000014 -
Phco6g01350 1205 Gene3D PAS domain 844 956 - -
Phco6g01350 1205 PANTHER OS08G0260000 PROTEIN 149 1036 - -
Phco6g01350 1205 SUPERFAMILY PYP-like sensor domain (PAS domain) 845 951 IPR035965 -
Phco6g01350 1205 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 300 472 IPR016132 -
Phco6g01350 1205 Pfam PAS fold 831 953 IPR013767 GO:0006355
Phco6g01350 1205 Pfam PAS fold 701 815 IPR013767 GO:0006355
Phco6g01350 1205 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1036 1189 IPR036890 -
Phco6g01350 1205 SUPERFAMILY PYP-like sensor domain (PAS domain) 704 811 IPR035965 -
Phco6g01350 1205 Gene3D - 487 660 IPR043150 -
Phco6g01350 1205 ProSiteProfiles PAS repeat profile. 831 883 IPR000014 -
Phco6g01350 1205 FunFam Phytochrome 694 825 - -
Phco6g01350 1205 Pfam PAS fold 151 267 IPR013654 GO:0006355
Phco6g01350 1205 ProSitePatterns Phytochrome chromophore attachment site signature. 400 409 IPR013516 -
Phco6g01350 1205 CDD PAS 842 953 IPR000014 -
Phco6g01350 1205 SMART pas_2 830 899 IPR000014 -
Phco6g01350 1205 SMART pas_2 700 766 IPR000014 -
Phco6g01350 1205 FunFam Phytochrome 487 621 - -
Phco6g01350 1205 Pfam GAF domain 301 482 IPR003018 GO:0005515
Phco6g01350 1205 PRINTS Phytochrome signature 215 237 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 630 648 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 813 833 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 720 735 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 400 421 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 793 810 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 315 334 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 701 717 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 512 532 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 PRINTS Phytochrome signature 597 616 IPR001294 GO:0006355|GO:0009584
Phco6g01350 1205 Gene3D PAS domain 156 403 - -
Phco6g01350 1205 CDD PAS 709 815 IPR000014 -
Phco6g01350 1205 Gene3D PAS domain 692 829 - -
Phco6g01350 1205 SUPERFAMILY PYP-like sensor domain (PAS domain) 156 268 IPR035965 -
Phco6g01350 1205 Gene3D - 281 643 IPR029016 -
Phco6g01350 1205 Pfam Phytochrome region 495 670 IPR013515 GO:0006355|GO:0009584
Phco6g01350 1205 ProSiteProfiles Histidine kinase domain profile. 982 1201 IPR005467 -
Phco6g01350 1205 SMART HKATPase_4 1087 1199 IPR003594 -
Phco6g01350 1205 SMART gaf_1 300 492 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01350 Phco-Chr6 13648174 13654016 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01350 6 13648174 13654016 Phco6g01350 6 13648174 13654016 ECH
Phco2g02532 2 55222439 55232396 Phco6g01350 6 13648174 13654016 PCT