Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02532 ATGATTATTACGGGTCAAGAGTTGGAACAGGTTAATATGGATTGGAGAATGGAAGGTTGCTTGATCAATGCTGCTGTTGGAGAGCACCATGCCATTTCCATGTTGACTAAAGAAATTGAACGTGAGGTTTGGTCTACTTATGGTCCCAAACTTGGTAGTGGAAACCATGGGAGTATCCACTGTGTCTCAGCTCTAACTGCTGGGTTCTGTGAGCTTGGAGGGGTTCCCACTTTCCACTTAGCTGTGTCCCAAAGTGCAGTTGAAGTGACAATGTCCTCCTCAAGGCCTAGTCAAACATCCAGCAATAATTCTGGCAGATCAAGGTCATCGAGACGCAGTGCTAGGGTTCTTGCTCAGACAACTTTAGATGCAAAACTGCATGCAACTTTTGAGGAATCAGGTAGTTCTTTTAACTACTCCAATTCAGTGAGACTGTCTTCCGGCACAGGCACTACCAATGGTGATCATCAAACAAGGTCTGATGGAGTAACAACTGCTTACCTCCATCAGTTACAGAAAAGCAAGCTTATCCAACCATTTGGGTGCTTGCTAGCCGTAGATGAGAAAACATGTAAGGTCATTGCTTATAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGGTCTTGGCATTGGCACCGACATACGAACTATTTTCACTGCCCCGAGTTCTACTTCTATTCAGAAGGCACTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTTCATTGCAAGTCCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGTAGTGTGATCATTGATTTTGAGCCGGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCCTGCAATCCTATAAGTTTGCAGCTAAAGCAATAACTAGATTGCAATCCTTGCCTAGTGGGAGCATGGACACTCTGTGTGACACAATGGTTCGAGAGGTTTTTGAACTCACAGGTTATGATAGAGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAAGTGAAAAGGCCAGGCCTAGATCCATATCTGGGGTTGCACTACCCAGCAACTGATTTTCCTCAGGCTACACGTTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGTCGTGCAAAGCATGTGAAGGTGCTTCAGGACAAAAAAATTCCATTTGAATTAACTTTGTGTGGATCAACCTTGAGGGCTGCTCATAGTTGTCACTTGCAATACATGCAAAACATGAATTCTAGTGCTTCCTTGGTTATGGCGGTTGTAGTCAATGACAATGATGACGATGGGGATAGTTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGACTATGGGGTTTAGTAGTTTGCCATCACTCTACTCCCAGGTTTGTTCCTTTCCCTCTCAGGTATGCTTGCGAATTCCTGGCTCAGGTATTTGCCATCCATGTGAACAAAGAACTTGAGTTAGAGTATCAGATTATTGAGAAGAATATCCTGAGGACTCAAACTCTTTTGTGTGATATGCTGATGCGAGATGCACCCCTGGGTATTGTATCACAGAGTCCTAATATAATGGATCTTGTGAAGTGCGATGGTGCAGCACTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTGTGGCTGTCTGAATTTCACAGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCAGGGGCTGCTACTCTTGGTGATATAACTTGTGGAATGGCAGCTGTCAGAATAGCTTCCAAAGATATAGTTTTCTGGTTTCGATCTCACACGGCCGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTACGAGGATGCATCCAAGATCTTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGTTTGCCGTGGAAGGACTATGAAATGGATGTCATTCATTCATTGCAACTAATACTGAGAAATGCATTCAAAGACACTGAGAGAATGGAGATAAGCACATATGCTATCAATTCAAGATTAGGTGATTTAAAAATTGAAGGGATGCAGGATCTGGAAGCAGTGACTAGTGAGATGGTAAGGTTAATTGAGACAGCAACAGTGCCAATTTTGGCTGTTGATGTTAATGGGATGGTCAATGGATGGAATACAAAAATTGCTGAGTTGACATGTCTTCCAGTTGAGCAAGCTATTGGGAAGCATTTACTCACTCTTGTTGAAGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAGGAAGAGAAAAATGTGCAATTTGAGATCAAAACACACGATTTGAAGATTGATTCTGGTCCTATCAGCTTGGTGGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTGATGGACAAATTCACCAGAATTGAAGGCGACTACAAGGCAATTGTGCAGAACCGAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGGTGGTGTTGTGAATGGAATTCAGCTATGACAAAATTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGGGAGGTTTTTGGGACACAAATAGCTTATTGTCGTCTGAGGAATCAAGAAGCTGTTGTTAACTTCAGCATTGTACTTAACAAAGCCATGGCTGGTTTGGAAACGGAGAAGGTTCCTTTTAGTTTCTTTACTCGTGATGGGAAACACGTAGAATGTCTGCTTTCTGTGAGTAAGAAGTTGGATGCAGAGAGTGTAGTTACTGGAGTCTTCTGCTTCTTGCAACTAGCTAGTCCCGAGCTGCAACAAGCATTACACATTCAGCACCTATCTGAACAAACTGCTTCCAAAAGACTGAAAGCTTTAACTTATTTGAAAAGGCAAATCCAAAGTCCTTTATATGGGATTGTGTTCTCCCGCAAATTGTTAGAAGGTACTGAATTGGGAGCTGAACAAAAACAATTTCTGCAAACGGGTGGTAGGTGTCAACGCCAGCTTAGCAAAGTCCTTGACTCAGATCTTGACAGCATCATTGAAGGCTACCTGGATTTGGAGATGGTTGAATTTACTCTGCATGAAGTGTTAGTTGCCTCCTTAAGTCAAGCCATGACAAAAGGTGATGCAAAAGGTATCCGATTAGTCAGTGATGTTGAAGAGCAAATCACACGAGAAACCTTGTATGGTGATGGTCTCAGGCTCCAGCAGGTCTTAGCCGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGATTGTTGTAGCAGCCTCATTATCAAAACGGCAGTTAGGGAAACTAGTTCATCTTGCTAATTTGGAGCTCAGCATAACACATGAGGGTTTTGGGGTTCCAGAAACATTGCTGAACCAAATGTTTGGACGTGATGGTGATGAATCTGAGGAGGGTATCAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTGATGAATGGAGAAGTGCGTTATATAAGGGAAGCAGGCAATTCATCTTTCATCTTATCAGTTGAACTTGTTAGAAATAATCCAAATTAA 3657 0.4301 MIITGQELEQVNMDWRMEGCLINAAVGEHHAISMLTKEIEREVWSTYGPKLGSGNHGSIHCVSALTAGFCELGGVPTFHLAVSQSAVEVTMSSSRPSQTSSNNSGRSRSSRRSARVLAQTTLDAKLHATFEESGSSFNYSNSVRLSSGTGTTNGDHQTRSDGVTTAYLHQLQKSKLIQPFGCLLAVDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPGLGIGTDIRTIFTAPSSTSIQKALGFGEVSLLNPILVHCKSSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKFAAKAITRLQSLPSGSMDTLCDTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGLDPYLGLHYPATDFPQATRFLFMKNKVRMIVDCRAKHVKVLQDKKIPFELTLCGSTLRAAHSCHLQYMQNMNSSASLVMAVVVNDNDDDGDSSDAVQPQKRKRLWGLVVCHHSTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSEFHRDSTGLSTDSLSDAGFPGAATLGDITCGMAAVRIASKDIVFWFRSHTAAEIRWGGAKHEPGERDDGTRMHPRSSFKAFLEVVKTRSLPWKDYEMDVIHSLQLILRNAFKDTERMEISTYAINSRLGDLKIEGMQDLEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELTCLPVEQAIGKHLLTLVEDFSVDRVKKMLDMALQGEEEKNVQFEIKTHDLKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREEVMDKMLLGEVFGTQIAYCRLRNQEAVVNFSIVLNKAMAGLETEKVPFSFFTRDGKHVECLLSVSKKLDAESVVTGVFCFLQLASPELQQALHIQHLSEQTASKRLKALTYLKRQIQSPLYGIVFSRKLLEGTELGAEQKQFLQTGGRCQRQLSKVLDSDLDSIIEGYLDLEMVEFTLHEVLVASLSQAMTKGDAKGIRLVSDVEEQITRETLYGDGLRLQQVLADFLLISINFTPTGGQIVVAASLSKRQLGKLVHLANLELSITHEGFGVPETLLNQMFGRDGDESEEGISMLISRKLLKLMNGEVRYIREAGNSSFILSVELVRNNPN 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02532 1218 SMART pas_2 716 782 IPR000014 -
Phco2g02532 1218 SMART pas_2 846 915 IPR000014 -
Phco2g02532 1218 Coils Coil 495 515 - -
Phco2g02532 1218 SMART gaf_1 315 508 IPR003018 GO:0005515
Phco2g02532 1218 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 315 488 IPR016132 -
Phco2g02532 1218 MobiDBLite consensus disorder prediction 90 116 - -
Phco2g02532 1218 ProSiteProfiles PAS repeat profile. 847 899 IPR000014 -
Phco2g02532 1218 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1102 1210 IPR003594 -
Phco2g02532 1218 Gene3D PAS domain 171 418 - -
Phco2g02532 1218 Gene3D - 296 659 IPR029016 -
Phco2g02532 1218 Gene3D PAS domain 860 972 - -
Phco2g02532 1218 SUPERFAMILY PYP-like sensor domain (PAS domain) 172 284 IPR035965 -
Phco2g02532 1218 NCBIfam PAS domain S-box protein 721 837 IPR000014 -
Phco2g02532 1218 Gene3D PAS domain 709 845 - -
Phco2g02532 1218 Pfam PAS fold 847 969 IPR013767 GO:0006355
Phco2g02532 1218 Pfam PAS fold 717 831 IPR013767 GO:0006355
Phco2g02532 1218 ProSiteProfiles PAS repeat profile. 714 784 IPR000014 -
Phco2g02532 1218 CDD PAS 858 969 IPR000014 -
Phco2g02532 1218 Gene3D - 1031 1207 IPR036890 -
Phco2g02532 1218 ProSiteProfiles Histidine kinase domain profile. 998 1214 IPR005467 -
Phco2g02532 1218 Pfam GAF domain 316 498 IPR003018 GO:0005515
Phco2g02532 1218 Pfam PAS fold 166 282 IPR013654 GO:0006355
Phco2g02532 1218 SUPERFAMILY GAF domain-like 295 495 - -
Phco2g02532 1218 CDD PAS 725 831 IPR000014 -
Phco2g02532 1218 FunFam Phytochrome 503 634 - -
Phco2g02532 1218 FunFam Phytochrome 710 841 - -
Phco2g02532 1218 SMART HKATPase_4 1102 1214 IPR003594 -
Phco2g02532 1218 PRINTS Phytochrome signature 809 826 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 230 252 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 415 436 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 829 849 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 717 733 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 528 548 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 330 349 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 613 632 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 646 664 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 PRINTS Phytochrome signature 736 751 IPR001294 GO:0006355|GO:0009584
Phco2g02532 1218 SUPERFAMILY GAF domain-like 506 684 - -
Phco2g02532 1218 Gene3D - 503 676 IPR043150 -
Phco2g02532 1218 Pfam Phytochrome region 511 686 IPR013515 GO:0006355|GO:0009584
Phco2g02532 1218 SUPERFAMILY PYP-like sensor domain (PAS domain) 861 967 IPR035965 -
Phco2g02532 1218 SUPERFAMILY PYP-like sensor domain (PAS domain) 720 827 IPR035965 -
Phco2g02532 1218 PANTHER TWO-COMPONENT HISTIDINE KINASE 1003 1198 - -
Phco2g02532 1218 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1053 1207 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02532 Phco-Chr2 55222439 55232396 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02532 2 55222439 55232396 Phco2g02532 2 55222439 55232396 ECH
Phco2g02532 2 55222439 55232396 Phco6g01350 6 13648174 13654016 PCT