Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01328 ATGAAAACAGCAGTAAGACCTTCCTATCAGTGTAGATTCTCTCTGAAGATGGGGAACACGAATTTGTTGTTCACCTTTTGTTTGTGGGCTTTGACATGCTCACTTCTTCCTTTTTTCTCGTGTGGACTTATGAAAATTGGTTTGAAGAAGAGAGATGTAGATCTTGACAGTATCAGAACAGCTAGAATGGTACGAGAAAAGCTAAGATTAGGCAGACCTGTGTTGGGTGCATATGATCAATATGTTGGCAAACCAACCGATGAGGGCATAGTACCTTTGAAGAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCTCCGCAGAAATTTAATGTCATATTTGATACTGGAAGTTCCAACCTATGGGTTCCATCATCAAAGTGCTATTTTTCTCTTGCCTGCTATACCCATCATTGGTACAAGCCAAAGAAGTCCAAAACATATATAAAAAATGGAACATCATGTAAAATAAGCTATGGATCTGGATCAATATCTGGTTTTTTCAGTGAAGATAGTGTTAAAGTTGGTGATATTGTTGTAAAGAAACAGGATTTCATTGAGGCAACTAGAGAAGGAAGTCTTTCCTTTCTGTTAGCGAAGTTTGATGGATTACTTGGGCTTGGGTTTCAGGAGATCTCAGTTGAAAATGCTGTGCCAGTATGGTACAATATGGTGCAGCAAAATCTTGTAAGTGAGCAGGTGTTCTCTTTTTGGCTCAATGGAGATCCCTATGCGAAAGAGGGTGGTGAACTAGTTTTTGGAGGTGTTGATCCAAAACACTTCAAAGGAAATCACACTTATGTTCCAGTTACTAAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCATCGGTGGTCTCTCAACAGGTGTCTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTAACTGAAATCAATCATGCTATTGGAGCTGAAGGAGTTCTAAGCGTAGAATGTAAGGAAGTTGTTTCTGAATATGGAGAATTGTTATGGGATCTCTTGATATCTGGGGTACGACCTGGTGATGTGTGTTCACAGGTTGGTTTATGTGTTGCCAAAAGGGGTCAATCAGAGAGCAATGGAATTGAGATGGTGACCGAAAAGGAACAGAGAGAGTTGTCAGCTAAAGATACTGTTTTGTGCACTCCCTGTCAGATGCTTGTGATTTGGATTCAGAATCAACTAAAACAACAGAAGACCAAGGAAACAGTTTTCAACTATGTAAATCAGCTGTGCGAGAACTTGCCAAGTCCAAATGGAGAGTCGGTAGTAAACTGTAATGGCATTTCTGGATTACCCAACATCACATTTACTGTTGGAGACAAACCTTTCACCCTCACTCCTGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCATTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTTTGGATTCTTGGGGATGTTTTCATGAGGGTATATCACACTGTCTTTGACTATGGGAATCTCAGAGTTGGTTTCGCCAAAGCTGCGTAA 1575 0.407 MKTAVRPSYQCRFSLKMGNTNLLFTFCLWALTCSLLPFFSCGLMKIGLKKRDVDLDSIRTARMVREKLRLGRPVLGAYDQYVGKPTDEGIVPLKNYLDAQYYGEIGIGTPPQKFNVIFDTGSSNLWVPSSKCYFSLACYTHHWYKPKKSKTYIKNGTSCKISYGSGSISGFFSEDSVKVGDIVVKKQDFIEATREGSLSFLLAKFDGLLGLGFQEISVENAVPVWYNMVQQNLVSEQVFSFWLNGDPYAKEGGELVFGGVDPKHFKGNHTYVPVTKKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEVVSEYGELLWDLLISGVRPGDVCSQVGLCVAKRGQSESNGIEMVTEKEQRELSAKDTVLCTPCQMLVIWIQNQLKQQKTKETVFNYVNQLCENLPSPNGESVVNCNGISGLPNITFTVGDKPFTLTPEQYILKTGEGIAEVCISGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLRVGFAKAA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01328 524 ProSiteProfiles Saposin B type domain profile. 331 371 IPR008139 -
Phco6g01328 524 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 303 314 IPR001969 GO:0004190|GO:0006508
Phco6g01328 524 FunFam Lysosomal aspartic protease 87 329 - -
Phco6g01328 524 CDD phytepsin 91 522 IPR033869 GO:0004190
Phco6g01328 524 Gene3D - 331 433 - -
Phco6g01328 524 Gene3D Acid Proteases 44 259 IPR021109 -
Phco6g01328 524 FunFam Lysosomal aspartic protease 369 523 - -
Phco6g01328 524 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 85 522 IPR001461 GO:0004190|GO:0006508
Phco6g01328 524 SUPERFAMILY Saposin 332 433 IPR011001 -
Phco6g01328 524 Gene3D Acid Proteases 260 524 IPR021109 -
Phco6g01328 524 PRINTS Pepsin (A1) aspartic protease family signature 253 266 IPR001461 GO:0004190|GO:0006508
Phco6g01328 524 PRINTS Pepsin (A1) aspartic protease family signature 303 314 IPR001461 GO:0004190|GO:0006508
Phco6g01328 524 PRINTS Pepsin (A1) aspartic protease family signature 497 512 IPR001461 GO:0004190|GO:0006508
Phco6g01328 524 PRINTS Pepsin (A1) aspartic protease family signature 107 127 IPR001461 GO:0004190|GO:0006508
Phco6g01328 524 ProSiteProfiles Peptidase family A1 domain profile. 101 521 IPR033121 -
Phco6g01328 524 ProSiteProfiles Saposin B type domain profile. 394 435 IPR008139 -
Phco6g01328 524 Pfam Eukaryotic aspartyl protease 100 523 IPR033121 -
Phco6g01328 524 Pfam Saposin-like type B, region 1 397 433 IPR007856 GO:0006629
Phco6g01328 524 Pfam Saposin-like type B, region 2 335 367 IPR008138 -
Phco6g01328 524 SUPERFAMILY Acid proteases 32 523 IPR021109 -
Phco6g01328 524 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 116 127 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01328 Phco-Chr6 13359407 13366092 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01328 6 13359407 13366092 Phco6g01328 6 13359407 13366092 ECH
Phco2g02545 2 55313019 55318974 Phco6g01328 6 13359407 13366092 PCT