Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02545 ATGAGACGTTCATTTGTGCACTATGACGTGAACGTAACTAAGTATAGGAAGTTACTGCTAACTTATGAATGGACATCCATCCATTATTATTTATTGGTTACAAGCTTCCACCTTTTGTTTGTGCTTGTGTGCGACTTCTCTCTATTTCATTCGTGGGGCGCTCATAGCAGAAACATCAGCTTCTGCAGTAGCTTTAAGCTGCTAAAAGGTTTTGAGGAATCTGTATTTTCCTTGACCATGGAGCAAAAGCATTTGATGGTGGCCTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTTTCTCATTTGGAATTCTGAGAATTGGTTTGCAGAAGAGACCTCTAGATCTTAATAGTATTAGTGCTGCTAGAAAGGCCAGAGAAGGTTTAAGATCTGGAAGGCCAATTATGGGTGAGTATGATCAGTTCATTAGTAAGGCAAAAGGTGAAGATATTGTACCTTTGAAAAATTATTTAGATGCTCAGTATTTTGGTGAGATTGGAATTGGCACACCGCCTCAGACCTTTACTGTTGTATTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCAAATTGCTACTTTTCTCTTGCTTGTTATACCCATAATTGGTACAAGGCAAAGAAATCCAGAACATATGTCAAAAATGGAACATCATGTAAAATAACCTATGGATCTGGATCAATATCTGGTTACTTCAGTCAAGATAGTGTTAAAGTTGGCAACGCTGTTGTCAAGCAGCTGGATTTCATTGAAGCTACCCGAGAAGGAAGTCTTTCCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCTGTTGCAGATGCTGTGCCATTATGGTACAAAATGGTGGAGCAAAATCTTATCGGTGAGAAGGTGTTTTCATTTTGGTTGAATGGGGATCCAAATGCAAAAAAAGGCGGTGAACTAGTTTTTGGTGGGGTTAACCCGAAGCACTTCAAAGGAGATCACATATATTTTCCAGTTACTGAAAAAGGTTACTGGCAGATTGAAATTGGAGATTTTTTCATTGGAGGTGCTTCTACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTAGCTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGATGATATGGGATCTCTTGGTATCAGGGGTGAAACCTGATGACATATGCTCACAAGTTGGTTTATGTTCTGCCAAAAGGATTCAATCTAAGAGCCCTGGGATTGAAATGGTAATTGAAAAGGAACAGAGTGAGTTGACAGCAAGAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAACAAACAAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCTTGCCAAGTCCCTCTGGAGAGTCAGTGATAAGCTGTAGCAGTATTTCCAAGATGCCAAACATTACATTCACAATTGGAGATAAACCTTTTGTCCTTACACCAGAGCAGTATATTTTGAGAACTGGAGAAGGCATTACCGAAGTCTGCCTTAGTGGGTTTATTGCTCTTGATGTTCCTCCTCCACGGGGTCCATTGTGGATTCTTGGGGATATTTTCATGAGGGCTTATCACACCATCTTTGACTACGGAAATCTCCAAGTTGGGTTTGCTGAATCTGTCTAA 1764 0.4048 MRRSFVHYDVNVTKYRKLLLTYEWTSIHYYLLVTSFHLLFVLVCDFSLFHSWGAHSRNISFCSSFKLLKGFEESVFSLTMEQKHLMVAFCLWALTCSLLPSFSFGILRIGLQKRPLDLNSISAARKAREGLRSGRPIMGEYDQFISKAKGEDIVPLKNYLDAQYFGEIGIGTPPQTFTVVFDTGSSNLWVPSSNCYFSLACYTHNWYKAKKSRTYVKNGTSCKITYGSGSISGYFSQDSVKVGNAVVKQLDFIEATREGSLSFLSAKFDGILGLGFQEISVADAVPLWYKMVEQNLIGEKVFSFWLNGDPNAKKGGELVFGGVNPKHFKGDHIYFPVTEKGYWQIEIGDFFIGGASTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGEMIWDLLVSGVKPDDICSQVGLCSAKRIQSKSPGIEMVIEKEQSELTARDTPLCSSCQMLVLWIQNQLKQKQTKDRVFNYVNQLCESLPSPSGESVISCSSISKMPNITFTIGDKPFVLTPEQYILRTGEGITEVCLSGFIALDVPPPRGPLWILGDIFMRAYHTIFDYGNLQVGFAESV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02545 587 Gene3D Acid Proteases 107 322 IPR021109 -
Phco2g02545 587 Pfam Eukaryotic aspartyl protease 163 585 IPR033121 -
Phco2g02545 587 CDD phytepsin 154 585 IPR033869 GO:0004190
Phco2g02545 587 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 179 190 IPR001969 GO:0004190|GO:0006508
Phco2g02545 587 Gene3D Acid Proteases 324 586 IPR021109 -
Phco2g02545 587 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 97 585 IPR001461 GO:0004190|GO:0006508
Phco2g02545 587 Pfam Saposin-like type B, region 2 398 430 IPR008138 -
Phco2g02545 587 Pfam Saposin-like type B, region 1 459 496 IPR007856 GO:0006629
Phco2g02545 587 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 366 377 IPR001969 GO:0004190|GO:0006508
Phco2g02545 587 ProSiteProfiles Saposin B type domain profile. 394 434 IPR008139 -
Phco2g02545 587 FunFam Aspartic proteinase A1 394 496 - -
Phco2g02545 587 ProSiteProfiles Saposin B type domain profile. 457 498 IPR008139 -
Phco2g02545 587 Gene3D - 394 496 - -
Phco2g02545 587 ProSiteProfiles Peptidase family A1 domain profile. 164 584 IPR033121 -
Phco2g02545 587 SUPERFAMILY Acid proteases 95 585 IPR021109 -
Phco2g02545 587 PRINTS Pepsin (A1) aspartic protease family signature 560 575 IPR001461 GO:0004190|GO:0006508
Phco2g02545 587 PRINTS Pepsin (A1) aspartic protease family signature 170 190 IPR001461 GO:0004190|GO:0006508
Phco2g02545 587 PRINTS Pepsin (A1) aspartic protease family signature 316 329 IPR001461 GO:0004190|GO:0006508
Phco2g02545 587 PRINTS Pepsin (A1) aspartic protease family signature 366 377 IPR001461 GO:0004190|GO:0006508
Phco2g02545 587 FunFam Lysosomal aspartic protease 150 392 - -
Phco2g02545 587 SMART sapb_4 358 430 IPR008139 -
Phco2g02545 587 SUPERFAMILY Saposin 395 496 IPR011001 -
Phco2g02545 587 FunFam Lysosomal aspartic protease 438 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02545 Phco-Chr2 55313019 55318974 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02545 2 55313019 55318974 Phco2g02545 2 55313019 55318974 ECH
Phco2g02545 2 55313019 55318974 Phco6g01328 6 13359407 13366092 PCT