Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01320 ATGGCCAAGGAAGCTTCTCTATGCCTCTTCTTTCTCTCCTTTCTCGTTATCTCCTGTTCTGGATCTCTGGTGGGTATTTCCTACCGTGAGAGGGGAGGCACTTCAACATCTGCTAGAACCATATCATTCCTCCAGCAAAAGAACGTTTCCATGTCTCAGATTCGAATTTTTGTTACTGATCACAGGATTTTGAGCACGCTCAGCAACTCCATCGTGCCGACTGATATGTACTTGAACAGAAGTCAAGTTCAAAGTTTAATTACTTCGAAACCCTCCGAACTAAAAGCTCGTCTACTTAACTTTCTCGCACATTCAAACATCAAAAGCATCATTGCTAACTGTGGCAGTGAGTGCTTAGCACAAAATGAGATGCCTTTGTTCTCACGTGCTTTGAAATCAATTGGTTCAGTTCTCAGAGAGCTTCATATAGGGAGGGAGGTAAAAATCTCAGTAGCATTTCCACTCTCATTATTAGAAAAGTTGAATACATCGCATGAAAATAGTATTCGTAGGATTCTTTCATTTATAAGGGAAATGAAATCCTTTGTCATGGTAGAAGACAGCATTGATGGAGAATTAAGCACGGAGAGTCACTTTCTTCATGCCATAATAAAACGAGCCACTCTTGCTGCTTCCATTCTTCCTCGCAAAGATGTTCCTATCGTTTTAACAATCAAGACCACAGTTGTCCCTACTTCAATGGAATTAGCTCAATTTTGTGAGAGGGTATCCAAATATCTAGAAGCAAAAACTCATATTACAAAAAGAATAGCTGCATTGTATGCAGAGGTGCATAGAACAGAAGATTTTGCAAGTAAAGAACTCAAAAGGGAAGAGGAGGAACTGTTTCCTGTCTCCCGCAGAGAGATGCTCAGTAAATCCCACAAAAGGAGAAGTCTAGATGATACAACCAGCCCAACAAACACAGTTTTCCCCACAAATCCAGCATCATCCATTCCAATCATCACACCCCCAGATACACCAACCATCATCACAGTTCCTGCCACAAATCCTGTCACAATTTCCCCTTCCAATCCTGCTGGAATGCCCGTGACAGTTCCTTCTACCACACCTGTGCCTTTTCCTCCCACAAATCCAGCCAATACACCAGTACCAGTGAGCAATCCGGCTACAACAACTCCTGTAGGGATACCACCCCCAACAACCAACCCTGTGACTTATCCACCTTCATCAGGAAATGTTCCTGTCACAAATCCCCAAACTCAACCACCCCCTGCAAACACTAATGCTCCAGCCATTCAGGGGCAGCAGAGTTGGTGTGTGGCAAAGCAAGGAGCTCCTGAAGCTTCTCTTCAAGCAGCACTAGACTATGCTTGTGGAATGGGTGGGTCAGATTGTTCTCAAATTCAGCAGGGTGGGAATTGTTACAGTCCAGTTACATTGCAGAACCATGCTTCTTTTGCCTTCAACAGCTACTATCAAAAGAATCCAGCTCCAACAAGCTGTGACTTTGGAGGGAGTGCCACCTTAGTTAACACGAATCCAAGCTCGGGTTCTTGCGTTTTCCCATCCTCATCGTCATCAACAACAGTAACGCCAAAGTCATCACCCCCAACACCACTTACACAATCAAGTCCAACACTACCACCACCAAGTCCAGTTACGCCTGCACCATCAATTCCAACGGCACCACCAACAACATCAGTAACAGGCCCATTCGGGTATGGTACCCCACCTTCAGTGTTAAATTCAAGCAACCCCGCGTCAGGTACAATGCCAGATTTTGGGTATGAAAGCCCTCCTGTTGTAAATACAACGTCAGCCTCGCATTCTATGAGTTTGAGACCTTCTGTTGGCTGCATTGTTCTGATGGTATCATTTGTCACTACCAGACTCGGTATGCATCCATAG 1872 0.4455 MAKEASLCLFFLSFLVISCSGSLVGISYRERGGTSTSARTISFLQQKNVSMSQIRIFVTDHRILSTLSNSIVPTDMYLNRSQVQSLITSKPSELKARLLNFLAHSNIKSIIANCGSECLAQNEMPLFSRALKSIGSVLRELHIGREVKISVAFPLSLLEKLNTSHENSIRRILSFIREMKSFVMVEDSIDGELSTESHFLHAIIKRATLAASILPRKDVPIVLTIKTTVVPTSMELAQFCERVSKYLEAKTHITKRIAALYAEVHRTEDFASKELKREEEELFPVSRREMLSKSHKRRSLDDTTSPTNTVFPTNPASSIPIITPPDTPTIITVPATNPVTISPSNPAGMPVTVPSTTPVPFPPTNPANTPVPVSNPATTTPVGIPPPTTNPVTYPPSSGNVPVTNPQTQPPPANTNAPAIQGQQSWCVAKQGAPEASLQAALDYACGMGGSDCSQIQQGGNCYSPVTLQNHASFAFNSYYQKNPAPTSCDFGGSATLVNTNPSSGSCVFPSSSSSTTVTPKSSPPTPLTQSSPTLPPPSPVTPAPSIPTAPPTTSVTGPFGYGTPPSVLNSSNPASGTMPDFGYESPPVVNTTSASHSMSLRPSVGCIVLMVSFVTTRLGMHP 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01320 623 Gene3D - 420 521 - -
Phco6g01320 623 MobiDBLite consensus disorder prediction 303 317 - -
Phco6g01320 623 MobiDBLite consensus disorder prediction 379 393 - -
Phco6g01320 623 PANTHER BETA-1,3 GLUCANASE 421 519 IPR044788 -
Phco6g01320 623 MobiDBLite consensus disorder prediction 374 419 - -
Phco6g01320 623 MobiDBLite consensus disorder prediction 289 322 - -
Phco6g01320 623 Pfam X8 domain 426 496 IPR012946 -
Phco6g01320 623 MobiDBLite consensus disorder prediction 502 525 - -
Phco6g01320 623 PRINTS Proline rich extensin signature 320 336 - -
Phco6g01320 623 PRINTS Proline rich extensin signature 304 316 - -
Phco6g01320 623 PRINTS Proline rich extensin signature 351 363 - -
Phco6g01320 623 PRINTS Proline rich extensin signature 395 411 - -
Phco6g01320 623 PRINTS Proline rich extensin signature 365 386 - -
Phco6g01320 623 PRINTS Proline rich extensin signature 513 538 - -
Phco6g01320 623 MobiDBLite consensus disorder prediction 502 580 - -
Phco6g01320 623 Gene3D Glycosidases 24 188 - -
Phco6g01320 623 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Phco6g01320 623 MobiDBLite consensus disorder prediction 526 552 - -
Phco6g01320 623 SMART X8_cls 425 509 IPR012946 -
Phco6g01320 623 MobiDBLite consensus disorder prediction 553 579 - -
Phco6g01320 623 FunFam Glucan endo-1,3-beta-glucosidase 4 420 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01320 Phco-Chr6 13306954 13309565 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01320 6 13306954 13309565 Phco6g01320 6 13306954 13309565 ECH
Phco2g02548 2 55347591 55350027 Phco6g01320 6 13306954 13309565 PCT