Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01314 ATGGGGACAGAAAACCCTGGTCGACCAGCCTTCCTTTCTAGACCACCCTTTGCTGGTACACAGGGTATGGCACCTTTTTCGTCAGCTGGTACCATGGTTGGGTCTGAGCCTCCTTCTTTCAGACCTACTCCTCCTGCTCCTCCCTTGGCATCCACACCATTTTCATCATCTGCGCCACCGGGCCAGTTTAATGACCCCTCAGTGTCTCCTTCTCCTTCCAACTTCCCACCTGCTGCTGGACCTTTCCAGCGTTTTCCGATGCCACAGTTCTCCTCAAATGCTCAAGCACCTCCCCTGCGTGCTCCACTCATGGGACAACCAACATTTCAACCATCTGCGGGTCAAACACAGTCTTTTCCGGCTTCTCTTCAGCCTCAGCCGCACACGCCTTTTGTTTCAATAGGGTCTCCCCCTTCTGCACTTCCAGGATCGAGTGTTCCTCCTCCTGTGTTTCAGCCATCTTTTCCTGGATATCCGCAGAAACAGGCTGGTGCAGAAATGCTAGCTTCCTCTGTGCATTCCTCTCACCCTTCAAATCAAGGAAATTATGGGCCTGTCCATGCACCACCTATGCCTTTCCCTCATCGAGGAGGTTATGTTTCGCAGCCCCCAATGGCTCCTCCGTCAGGCACCCAGCCCATGCGATCTGAACCGCCTACGGGTGTCATTAGTGGCTTGACAGAGGACTTCAATTCACTATCAATTCAAACTCGTCCTGGACTCATGGAGCCGTCCATCGATACTAAAGAATTGCCAAGGCCATTGGAAGGCGATGAGGAGCAAAAGTTTTTAGCTGATGTGTATCCCATGAACTGCAATACTAGATTTCTACGACTCACAACCAGTGGAATGCCTAACTCCCAGTCCTTATGTTCAAGGTGGCATCTTCCACTTGGAGCAGTTGTATGTCCACTTGCAGAGTCTCCTGATGGGGAAGAGGTACCCATAGTTAATTTTACTGCAACTGGTGTCGTACGCTGTAGGAGATGCCGCACATATGTAAATCCCTATGTCAAATTTACTGAAGGAGGAAGAAAGTTCCGGTGCAACACCTGCTCCTTACTTAATGACGTTCCTAGTGAATATTATGCACAATTAGATCCCACAGGCAGAAGAGTTGATTTGAATCAAAGACCCGAGCTTACAAACGGTACTGTAGAATTTGTTGCCCCAGCAGAATATATGGTGCGGCCTCCTATGCCTCCAGTATATTTCTTCCTTATTGATGTTTCCATATCTGCGGTTAGAAGCGGAATGATTGAGGTTGTGGCTGAAACAATCAGGTCATGTTTAGATGAGCTTCCGGGCTTTCCAAGAACACAAATAGGGTTTGCAACTTTTGACAGTGCAATACATTTTTATAACATGAAGTCATCCTTGACTCAACCACAAATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCCCTGCCAGATGATCTTCTTGTCAACTTATCAGAATCAAGAAGTGTGGTGGAAGCGTTTCTTGATAGTCTACCATCCATGTTCCAGGACAATGTGAATCTGGAATCTGCTTTTGGTCCTTCTCTGAAGGCTGCCTTTGCAATTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTCCCATCTCTTGGTGCCGGTCGATTGAAACTACGTGGAGATGATTCTAAAGTTTACGGCACAGATAAAGAACATGTGTTAAGATTGCCAGAAGATCCCTTTTACAAACAAATGGCTGCTGAGTTTTCTAAATACCAAATCTCAGTGAATGTGTATGCATTCAGTGATAAGTACACCGACATAGCATCCCTAGGAACTCTGTCAAAGTATACCGCTGGTCAACTGTATTACTATCCAGCTTTCCAATCAGTCATTCACGGGGAGAAACTAAGAAATGAGCTAAGGAGAGACCTTACCAGAGAAACTGGCTGGGAAGCTGTATTGCGAATTAGATGTGCAAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAGATTTATTAGCACTTCCAGCTGTGGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAAACATTATTGACAACTCCGACAATGTATTTCCAAGTTGCATTGTTGTATACAGCATCTTGTGGAGAAAGGCGTATCAGAGTACATACAGCTGCGGCTCCAGTAGTAACAGAATTGGTAGACATGTATCGCTTGGCTGATACTGGTGCAATTTTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACATTATCCCATAAACTGGAAGAAGCCCGGAGTGCTGTACAACTAAGAATTGTGAAAGGCCTCCGAGATTATCGAAATATCTATGCTGCGCAACATCGCTTGGTGAATAGGATGGTATATCCTGAGTCATTAAAGTTCCTACCCTTGTATGGCTTAGCTCTTTGTAGATCAGCACCTCTCCGTGGTGGGTATGGGGATGTTTCACTAGATGAACGGTGTGCAGCTGGACACACAATGATGACCCTACCAATAAAAAGGATGTTGAAACTTCTCTACCCTAGTTTGCATCGACTTGATGAATATCTTCTAAATGCTGATGACTTGAGAAGCATTGACAGAAGGTTACCTTTGACTGGGGAGAGCTTGGATTCTAGGGGCCTTTATATATATGACGATGGCTTCCAGTTCATTTTATGGTTTGGTAGAGTGATTTCACCTGACATAGCTAAAAACTTACTTGGGTCTAACTTTGCAGCTGAGTTATCAAAGGTTACTCTAAATGAGAATGAGAATGATAATGAAATGTCCCGGAGGCTGATAAAGGTGAACACCCCAGAGAAGGATTCCTTCTTCTTTCAAACCTGTTTGAGGACCAGATGGGTGCTAATAATGGATATGCTGATTGGATAA 2883 0.4481 MGTENPGRPAFLSRPPFAGTQGMAPFSSAGTMVGSEPPSFRPTPPAPPLASTPFSSSAPPGQFNDPSVSPSPSNFPPAAGPFQRFPMPQFSSNAQAPPLRAPLMGQPTFQPSAGQTQSFPASLQPQPHTPFVSIGSPPSALPGSSVPPPVFQPSFPGYPQKQAGAEMLASSVHSSHPSNQGNYGPVHAPPMPFPHRGGYVSQPPMAPPSGTQPMRSEPPTGVISGLTEDFNSLSIQTRPGLMEPSIDTKELPRPLEGDEEQKFLADVYPMNCNTRFLRLTTSGMPNSQSLCSRWHLPLGAVVCPLAESPDGEEVPIVNFTATGVVRCRRCRTYVNPYVKFTEGGRKFRCNTCSLLNDVPSEYYAQLDPTGRRVDLNQRPELTNGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAETIRSCLDELPGFPRTQIGFATFDSAIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVEAFLDSLPSMFQDNVNLESAFGPSLKAAFAIMSQLGGKLLIFQNTLPSLGAGRLKLRGDDSKVYGTDKEHVLRLPEDPFYKQMAAEFSKYQISVNVYAFSDKYTDIASLGTLSKYTAGQLYYYPAFQSVIHGEKLRNELRRDLTRETGWEAVLRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTPTMYFQVALLYTASCGERRIRVHTAAAPVVTELVDMYRLADTGAILSLFSRLAIEKTLSHKLEEARSAVQLRIVKGLRDYRNIYAAQHRLVNRMVYPESLKFLPLYGLALCRSAPLRGGYGDVSLDERCAAGHTMMTLPIKRMLKLLYPSLHRLDEYLLNADDLRSIDRRLPLTGESLDSRGLYIYDDGFQFILWFGRVISPDIAKNLLGSNFAAELSKVTLNENENDNEMSRRLIKVNTPEKDSFFFQTCLRTRWVLIMDMLIG 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01314 960 MobiDBLite consensus disorder prediction 1 148 - -
Phco6g01314 960 Pfam Sec23/Sec24 beta-sandwich domain 641 724 IPR012990 -
Phco6g01314 960 Gene3D - 272 724 - -
Phco6g01314 960 Pfam Sec23/Sec24 helical domain 736 839 IPR006900 GO:0006886|GO:0006888|GO:0030127
Phco6g01314 960 Gene3D Severin 844 933 IPR029006 -
Phco6g01314 960 CDD Sec24-like 399 640 IPR041742 GO:0006886|GO:0006888|GO:0030127
Phco6g01314 960 Gene3D von Willebrand factor, type A domain 401 638 IPR036465 -
Phco6g01314 960 PANTHER SEC24-RELATED PROTEIN 77 933 - -
Phco6g01314 960 SUPERFAMILY beta-sandwich domain of Sec23/24 145 734 - -
Phco6g01314 960 FunFam protein transport protein Sec24D isoform X1 401 638 - -
Phco6g01314 960 MobiDBLite consensus disorder prediction 38 54 - -
Phco6g01314 960 SUPERFAMILY Helical domain of Sec23/24 736 843 IPR036175 GO:0006886|GO:0006888|GO:0030127
Phco6g01314 960 Gene3D Sec23/Sec24 helical domain 725 843 - -
Phco6g01314 960 SUPERFAMILY Zn-finger domain of Sec23/24 315 398 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Phco6g01314 960 Gene3D - 270 383 - -
Phco6g01314 960 MobiDBLite consensus disorder prediction 55 69 - -
Phco6g01314 960 Pfam Sec23/Sec24 trunk domain 399 635 IPR006896 GO:0006886|GO:0006888|GO:0030127
Phco6g01314 960 MobiDBLite consensus disorder prediction 108 130 - -
Phco6g01314 960 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 855 928 IPR036180 -
Phco6g01314 960 Pfam Sec23/Sec24 zinc finger 325 362 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Phco6g01314 960 SUPERFAMILY vWA-like 399 639 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01314 Phco-Chr6 13221000 13231176 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02553 2 55383762 55392350 Phco6g01314 6 13221000 13231176 PCT