Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02553 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTCCCTTCAAGGCCTTCTCCACCGCCTTTTCCTACTGCACAGACAGTGACACCTTTTTCATCAACTGGTTCCGTGGTTGGATCAGAGCCTCCTTCTTTTCGGTCCGCTCCTCCGGCTCCTCCTCCGCAAGCTGCCACGCCATTTTCCTCAGCCGGACTTGCTGCAGTTAGACCAGGGGCACCCAGTTTTAGGCCTGCACCACCAGGGAGGTTCAATGATCCGTCAGTGCCTCCTCCTCCTCCTCCTCAATCATCCAATGCCCCGCCGGCTGCTGGACCCTTTCAGCAGTTTCCGGCACCGCCCTTCGCCCCGACAACGCAGCCACCACGTGCTCCTCCTTTGTCCATGGGACAACCATCATTTCAATCTCCACCTAGTCTAGCACCGCCATTTCCCACGTCTCTTCCAGCTCAGCCACAGATGCCTTTTGTTCCAATGGGCTCTCCCCCACCACAAAGTAGTGCTCCTGCGCATATGGGTTCAAATGTTCCTCCGCCTACATTTCAGCCGTCTTTTCCTGGGTACCCGAGTAAGCAGACTGGTTCTGAAATGCAAGGTCCACCTTTGCATTCCTCATTCCCTGCTAATCAAGGAAATTTTGGGCCTGTTCCACCTGTTGGAGCTTCTCCTTTTTTGTCTCATCAAGGAGGTTATGTTTCATCACCCCCAGTGGCTCCTCCGCTTGGTATCCAGCCAATGCAGCAGCAATCTGGATCTCTGACTCCTATGAGTACTGTTCAGGGCTTGGCAGAAGACTTCAATGCCCTCACAATGCAAACTCGTCCTGGAACAATGGATCCATTATTTGACCCCAAGGAACTTCCAAGGCCATTGGAAGGTGATGTTGAGCCAAAGAATTTGCTTGACATGTATCCCATGAACTGCAATCCCCGGTTTCTACGACTCACAACCAGTGCTGTACCAAGCTCCCAGTCCTTGGCTTCTAGGTGGCACCTTCCACTTGGAGCAGTTGTATCTCCGCTTGCTGAACCTCCTGATGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCAGCTAGTGTTGTTCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACAGAAGCAGGAAGAAAGTTCCGTTGCAACGTCTGTACCTTGCTTAATGATGTTCCTAGTGAATATTATTCACAATTAGATCCCACTGGAAAAAGAGTTGATATAAATCAACGGCCTGAGCTTACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATCAAGTCATGCTTGGATGAGCTGCCTGGCTTTCCACGTACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCCTGACTCAACCACAGATGTTGGTAGTGTCAGATCTGGATGATATATTTATTCCGCTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAAACCTTCCTAGATAGTTTACCAACCATGTTCCAGGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTCATGGTTATGAGTCAACTTGGAGGGAAATTGTTGATATTTCAAAACTCACTCCCATCTCTTGGTGTTGGCCGTTTGAAGTTGCGGGGAGATGATTCTCGTGTTTATGGGACTGACAAAGAACATGGACTGAGGCTGCCTGAAGATCCATTTTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATCTCAGCAAATGTTTATGCATTCAGTGATAAGTACACAGACGTAGCATCCTTGGGAACTCTGGCAAAATATACTGCTGGTCAAGTGTATTTCTATCCAGCTTTTCAAGCAGCTATTCATGGGGATAAATTGAGAAATGAATTAAGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTGGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCTATGCAGTTATCACTTGAAGAGACATTGTTGACAACTCGGACAATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGTGAAAGGCGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACAGAGTTGGCAGATATTTATCGTCTGGCTGATACTGGTGCTATTGTATTGCTGTTAAGCAGGCTAGCAATTGAGAAAACATTATCCCAAAAACTGGAAGATGCACGGACTGCTGTTCAACTAAGAATTGTGAAAGCCCTCAGGGAATATCGGAATCTTTATTCTGTGCAACATCGCTTGTCCAACAGAATGATATATCCTGAGTCTCTAAAGTTCCTAATTTTGTATGGATTAGCGCTGTGTAGATCAACAACTCTACGTGGAGGATTTGGTGATGTTCCACTGGATGAAAGATGTGCGGCAGGACACATAATGATGACTGTATCAATAAAAGGACTGTTGAAACTTCTCTATCCAAGTTTGATTCGACTTGATGGATATCTTCTGAAGGCATCTGTACAGGCTGATGACTTAAGTGTTGAGAGAAGGTTACCTTTGACAGGGGAGAGCTTAGATTCTAGGGGCCTTTATTTGTATGATGATGGTTTCCGTTTCATTATATGGTTTGGTAGGGTGATTTCACCGGATATAGCCAAGAATTTACTTGGGCCAGACTTTGCAGCAGAATTATCGAAGACTACACTCACTGAGCATGACAATGAAATGTGA 2883 0.4547 MGTENPGRPTFPSRPSPPPFPTAQTVTPFSSTGSVVGSEPPSFRSAPPAPPPQAATPFSSAGLAAVRPGAPSFRPAPPGRFNDPSVPPPPPPQSSNAPPAAGPFQQFPAPPFAPTTQPPRAPPLSMGQPSFQSPPSLAPPFPTSLPAQPQMPFVPMGSPPPQSSAPAHMGSNVPPPTFQPSFPGYPSKQTGSEMQGPPLHSSFPANQGNFGPVPPVGASPFLSHQGGYVSSPPVAPPLGIQPMQQQSGSLTPMSTVQGLAEDFNALTMQTRPGTMDPLFDPKELPRPLEGDVEPKNLLDMYPMNCNPRFLRLTTSAVPSSQSLASRWHLPLGAVVSPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYSQLDPTGKRVDINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVETFLDSLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDVASLGTLAKYTAGQVYFYPAFQAAIHGDKLRNELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTRTMYFQVALLYTASCGERRIRVHTMAVPVVTELADIYRLADTGAIVLLLSRLAIEKTLSQKLEDARTAVQLRIVKALREYRNLYSVQHRLSNRMIYPESLKFLILYGLALCRSTTLRGGFGDVPLDERCAAGHIMMTVSIKGLLKLLYPSLIRLDGYLLKASVQADDLSVERRLPLTGESLDSRGLYLYDDGFRFIIWFGRVISPDIAKNLLGPDFAAELSKTTLTEHDNEM 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02553 960 SUPERFAMILY Helical domain of Sec23/24 769 876 IPR036175 GO:0006886|GO:0006888|GO:0030127
Phco2g02553 960 Gene3D - 305 757 - -
Phco2g02553 960 Gene3D von Willebrand factor, type A domain 434 671 IPR036465 -
Phco2g02553 960 PANTHER SEC24-RELATED PROTEIN 149 960 - -
Phco2g02553 960 MobiDBLite consensus disorder prediction 25 39 - -
Phco2g02553 960 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 895 951 IPR036180 -
Phco2g02553 960 MobiDBLite consensus disorder prediction 1 251 - -
Phco2g02553 960 MobiDBLite consensus disorder prediction 183 208 - -
Phco2g02553 960 MobiDBLite consensus disorder prediction 10 24 - -
Phco2g02553 960 SUPERFAMILY beta-sandwich domain of Sec23/24 84 767 - -
Phco2g02553 960 Pfam Sec23/Sec24 beta-sandwich domain 674 758 IPR012990 -
Phco2g02553 960 MobiDBLite consensus disorder prediction 71 162 - -
Phco2g02553 960 Gene3D Sec23/Sec24 helical domain 758 876 - -
Phco2g02553 960 SUPERFAMILY vWA-like 432 671 IPR036465 -
Phco2g02553 960 FunFam protein transport protein Sec24D isoform X1 434 671 - -
Phco2g02553 960 Gene3D - 303 416 - -
Phco2g02553 960 Pfam Sec23/Sec24 helical domain 769 872 IPR006900 GO:0006886|GO:0006888|GO:0030127
Phco2g02553 960 SUPERFAMILY Zn-finger domain of Sec23/24 348 431 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Phco2g02553 960 Pfam Sec23/Sec24 zinc finger 358 395 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Phco2g02553 960 Gene3D Severin 877 959 IPR029006 -
Phco2g02553 960 CDD Sec24-like 432 673 IPR041742 GO:0006886|GO:0006888|GO:0030127
Phco2g02553 960 Pfam Sec23/Sec24 trunk domain 432 668 IPR006896 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02553 Phco-Chr2 55383762 55392350 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02553 2 55383762 55392350 Phco6g01314 6 13221000 13231176 PCT