LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g01271	ATGAAGGACTTCGGTTCTTCTTCAGATTTGGTTCTTGAGAGAAAAAAACGTCTCAAGGGAAGCTTCCTTAGCTTCTTTGATTGGAATGGCAAATATCAAAAGAAGCAGCTTTGTGACAGTCCTAAGTTGCCTGAAATTTCAAAGCAAGGAATGGAAAACATGGACAGCATGCCAAAGTCAGAAGTCAATGAGATAAAAATGAACGACAATGGAGCAAATCCTAGTAATAATGCAAGCAGTGGTTTTGATTGCGCCATATCAATTAGTAGTGATGAAGGGTGTCAGACTAAAGTCCCAGGGTTACTAGCCAGACTCATGGGTTTGGATTTATTGCCAGTTTCAACTGTCTCTGAGCTCTCTTCATCATCCACTTCCTTATATGGCTCCAACTCTCTTGGATCTTCCCATTCTGATGATGCGGATGCTCTTCACTCAATGGTTGACTATTGTTGTCATGTGGATTCGATAAACATGGGACTTAAGTGGGCCAAGCCTTCTTGGAGTGTCATGGAATCAAAAGTGAGAAACCCGGCCATGAAGGGATTTCAGACTGAGATGTTGCCTCCAAGGTCTGCCAAAACCATTCCAGTTACTTACAACAAACTTTTGTCTCCTATTAAGAGCCCTGGTTATATGCGACCTACGCATGCAACTCAAATTATGGAGGCAGCTGCCAAAATAATTGAGGCAAGTTCCCAACCATGTATGAGGAATAGAATGTCTTCAGCTGGACCTTCATCTGTACCCTTAAGAATTCTTGATCTGAAGGAGAAATTGGAAGCTTCCCAATATGAATCCAAGTTCAAAGGTAAGCACACTGCTAACCCTCTTAATGGAAAGCCTAGTGAGAGGAGAAACAGTTTATGTAAATCTACTTCGAAAGGTTCAAGAGATTCAGAAAAAAACAGTTCTTGCCGGTTGGCAAGCAAAGGAAAATCTGCTTCACTTGCAATTCCATCTAGAACCAATGTTCAGAGCTGTGACGAATTGACTTTGAATGGTAATAGGGGATGTGTGAAGCAGAAGGAACAAAATGATATAAAATCAAACCAGTTGTCTCGGAGCCAGAAAAAACAAAGTGCAGACCGAGCCAGAGACATTCAGCATAAAGCTTGTACAGGCCAGAATACTTATGTGCTTGGGAAGAATAACCAAAAGCTGAGTAGTGAAACCACCAAAGGAAACCCGGCTCACAAGGCTTACTCCCATAAGCCAACACAAAGTTGGTCTTTAGAAAGCTCTACTAGAGCAAAGAAGACCACAAAAAAGGGCGTTGTAAAAGCCAACACTGAGCCCAAAAGGTCAGGCACAAGGGTAACAGGTTCTCCAAAATCAGTTTCCAAAAGAAAGAGCATTTCCCAAAAGAAAAACTATATCAATAGGGAGGTTCACAATGAGGCAAGAGGCACTGATACTGCAGCTAATAATTATGAAAACAAGTCCATAAAATGCAATATTACAACTGATGGAAGTATTAACCAGGATGCATTTAGTATGAAAGGAAGCAATGGTGTGATTTCATTTACATTTACATCTCCCTTGAGAAGAAAAATGCCTGAGTTACAGTCCTCTATGGAGAAAACGATGGGAACAAGGAACAAAACTGATGTCAATTCTTGTAGCAATAACGATATGCTCTATCCCAAAAAATCATCATTATCCCCTCCCAGGTTACATGTAATAGATGGTGAGGCTTTAAGTGTCCTTTTGGAGAAAAAGCTGCAAGAACTGACCTCTAGAATTAACCCAACTCAATGCTCCCTGAAGATAGAAGGGTCCTCTGCTGGTTTGGGAGACAGAAGATTTCACCCCTACCTGGTTAGTAATAAATTGAACACCAGGCATGACAATTGTTTGTCAAGTGATAATATGGTGCTTAGTATGAATCAGCAACCACTGACAACAGAATCAATCGAAGGGCCTAGCTGTAGCAGCAACAGTGAAAGCAGAAATCAAAGTTACTTAGATAGTGCATATGGCAGCAGAGTTTATTCTTCCATGCAAGATGAAGAGGTATCTGGTTTTTCTCCAATGAATGAGTCCCTGCCACATGAAAACGAGGCTGAATGGTCTGACCAAAGCTCTTCCACAGTGATGGGGGATGACATGGTTGCCATTGAACAATCAAGTGTAATGTCAAATTCAGTCGAATTTACAAGATCAGCTAGGAACGTGGAATTTGAATATGTTAAGGATATACTCAACAATGCAGAGCTGATGACAGAAAAATTTGTAATGGGTGAGACAGATAAGATCATAATGCCTAATCTCTTTAATGTATTGGAGACTAAGAGCATTGTGGCAGAAAACTATGGAAAGTACTCTAAGATGGAGAGGAAGGTTATATTTGACACCACGAGTGAGTGCTTAGAGTTAAGATGTAGACAAGTTTTTGTTGGAAGCTGCAAAGCATGGCCTAAATGGGTGGCTTCAGTTCAGAAGAAGAGCTCTTTAGCAGAAGAGTTGTACAAGGAAATGTTGAGCCTTAGGAGCACGGAAGAATTAGTGGTGGATGAACTTGTCTGCAAGGACATGAGCACCCAATGGGGTAGATGGCTTGAGTTTGACACTGAAGCATTTGAAGAGGGTTCAGAACTTGAGTTTGATGTTGTGACCTGTTTGATTAACGAATTGGTTTCTGATTTGCTGCACTTTTAA	2658	0.4097	MKDFGSSSDLVLERKKRLKGSFLSFFDWNGKYQKKQLCDSPKLPEISKQGMENMDSMPKSEVNEIKMNDNGANPSNNASSGFDCAISISSDEGCQTKVPGLLARLMGLDLLPVSTVSELSSSSTSLYGSNSLGSSHSDDADALHSMVDYCCHVDSINMGLKWAKPSWSVMESKVRNPAMKGFQTEMLPPRSAKTIPVTYNKLLSPIKSPGYMRPTHATQIMEAAAKIIEASSQPCMRNRMSSAGPSSVPLRILDLKEKLEASQYESKFKGKHTANPLNGKPSERRNSLCKSTSKGSRDSEKNSSCRLASKGKSASLAIPSRTNVQSCDELTLNGNRGCVKQKEQNDIKSNQLSRSQKKQSADRARDIQHKACTGQNTYVLGKNNQKLSSETTKGNPAHKAYSHKPTQSWSLESSTRAKKTTKKGVVKANTEPKRSGTRVTGSPKSVSKRKSISQKKNYINREVHNEARGTDTAANNYENKSIKCNITTDGSINQDAFSMKGSNGVISFTFTSPLRRKMPELQSSMEKTMGTRNKTDVNSCSNNDMLYPKKSSLSPPRLHVIDGEALSVLLEKKLQELTSRINPTQCSLKIEGSSAGLGDRRFHPYLVSNKLNTRHDNCLSSDNMVLSMNQQPLTTESIEGPSCSSNSESRNQSYLDSAYGSRVYSSMQDEEVSGFSPMNESLPHENEAEWSDQSSSTVMGDDMVAIEQSSVMSNSVEFTRSARNVEFEYVKDILNNAELMTEKFVMGETDKIIMPNLFNVLETKSIVAENYGKYSKMERKVIFDTTSECLELRCRQVFVGSCKAWPKWVASVQKKSSLAEELYKEMLSLRSTEELVVDELVCKDMSTQWGRWLEFDTEAFEEGSELEFDVVTCLINELVSDLLHF	885

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	264	317	-	-
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	433	448	-	-
	Phco6g01271	885	PANTHER	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED	15	881	-	-
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	341	472	-	-
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	290	305	-	-
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	527	549	-	-
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	370	415	-	-
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	341	357	-	-
	Phco6g01271	885	MobiDBLite	consensus disorder prediction	670	694	-	-
	Phco6g01271	885	Pfam	Domain of unknown function (DUF4378)	726	877	IPR025486	-
	Phco6g01271	885	Pfam	DUF761-associated sequence motif	90	117	IPR032795	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g01271	Phco-Chr6	12800198	12803899	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco6g01271	6	12800198	12803899	Phco6g01271	6	12800198	12803899	ECH
	Phco2g02582	2	55628184	55635866	Phco6g01271	6	12800198	12803899	ECH
	Phco2g02582	2	55628184	55635866	Phco6g01271	6	12800198	12803899	PCT