Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01263 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAACACAGAGATGCGTTGAAGAGTGTTCGCATTCCCGCCATCTCTTCGCCGCAGTCCACCTCCTCCCGCGGCGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCCAATCGCTCTTACGCTCCGCTTAGTACCGATGATCCTGGCAATTCGAGTAGGGTTCCAAATGCAATCAATGTGGGATTACCTCCTGCGTGGGTGGATTTGTCGGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCCAAGGCTCACGCAAAGGCTTTGATGCCGTCATTTGGAGATGGGAAAGAAGATCAACATACCATCGAGACTCTAACACACGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTTCGGAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAACGTGCAGCGATCTATTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGACTACAAAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTAAATGGAGGTAAATCAAGATATGAAGATGATGATTTGGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTAAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAGAAAGAGATCCAGCAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATCGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGTATGGTAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATATTGTGA 984 0.4502 MATRNRTLLFRKHRDALKSVRIPAISSPQSTSSRGGGGPVIELVSTSLLNPNRSYAPLSTDDPGNSSRVPNAINVGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHTIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSIATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRYEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01263 327 Coils Coil 85 105 - -
Phco6g01263 327 PANTHER SYNTAXIN 85 312 IPR045242 -
Phco6g01263 327 SUPERFAMILY t-snare proteins 77 286 IPR010989 GO:0016020|GO:0016192
Phco6g01263 327 SMART SynN_4 72 187 IPR006011 GO:0016020
Phco6g01263 327 CDD SNARE_syntaxin16 236 292 - -
Phco6g01263 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco6g01263 327 SMART tSNARE_6 226 293 IPR000727 -
Phco6g01263 327 Gene3D - 78 285 - -
Phco6g01263 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Phco6g01263 327 FunFam Syntaxin-43 78 285 - -
Phco6g01263 327 Pfam SNARE domain 267 319 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01263 Phco-Chr6 12727596 12732018 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01263 6 12727596 12732018 Phco6g01263 6 12727596 12732018 ECH
Phco2g02416 2 54341751 54345812 Phco6g01263 6 12727596 12732018 ECH