Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02416 ATGGCGACGAGAAATCGAACTGTGGAGTTTAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGTGCACCTCTCTCCTCCTCTGTATCTGCTTCTTCCACCAGTCCCGTCATTGAAATGGTTTCACTTCTTCCTTCCAATCGATCATCCTATGCTCCTTTAAGCACTGAGGACCCATCCACCTCTAGGGATGCGTTTACTGTGGGGTTGCCACCGTCTTGGGTGGATGATTCTGAAGAAATAGCTACGGCTATACAACGTGCTCGGGTTAAAATTTCTGAGTTAACTAAGGCTCATTCGAAGGCTTTGATGCCTTCCTTTGGGGATGACAAAGAGGATCAGCGTCTTATTGAGACTCTCACCCAGGAAATTACATCTCTTCTTAGAAAGTCTGAAGTGAGGCTGAAAAGACTTTCTGCTGCTAGCGGGTCATCTGAGGATTCTAATGTTAGAAAAAATGTACAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAGCAGTCAGCATATTTAAAACGTCTACAACAACAAAAAGAGGGTTATGACGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCACATGATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGTGGAAAGGGAGAGAGAAATTGAACAGGTTGTTAAGTCAGTCCATGAACTTGCCCAAATCATGAAGGATCTCTCGGTCCTAGTGATAGACCAGGGAACAATTGTGGACAGAATTGACTACAACATTCAGAGTGTTTCTACGTCCGTTGAAGATGGCCTTGAGCAGTTGCAAAAGGCAGAGAGAACGCAGAAAAAAGGAGGGATGATTATGTGTGCCACATCGCTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAAGAGATCCTCCTCTAG 963 0.4434 MATRNRTVEFRKHRDAVKSVRAPLSSSVSASSTSPVIEMVSLLPSNRSSYAPLSTEDPSTSRDAFTVGLPPSWVDDSEEIATAIQRARVKISELTKAHSKALMPSFGDDKEDQRLIETLTQEITSLLRKSEVRLKRLSAASGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEGYDGVDLEMNFNGSKFGSHDDEFSDVGFSEEQMTKLKKSEQFSVEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEDGLEQLQKAERTQKKGGMIMCATSLVIMCFIMLVLLILKEILL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02416 320 SUPERFAMILY t-snare proteins 69 279 IPR010989 GO:0016020|GO:0016192
Phco2g02416 320 Pfam SNARE domain 260 312 IPR000727 -
Phco2g02416 320 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco2g02416 320 SMART SynN_4 64 180 IPR006011 GO:0016020
Phco2g02416 320 Gene3D - 70 278 - -
Phco2g02416 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Phco2g02416 320 SMART tSNARE_6 219 286 IPR000727 -
Phco2g02416 320 PANTHER SYNTAXIN 75 307 IPR045242 -
Phco2g02416 320 CDD SNARE_syntaxin16 229 285 - -
Phco2g02416 320 FunFam Syntaxin-43 70 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02416 Phco-Chr2 54341751 54345812 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02416 2 54341751 54345812 Phco2g02416 2 54341751 54345812 ECH
Phco2g02416 2 54341751 54345812 Phco6g01263 6 12727596 12732018 ECH