Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01250 ATGTCTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTTCAGTTTTTGGAGGAAGAGAAATTCAAAGAATCTGTACACAAGCTTGAGAAAGAATCTGGATTCTTTTTCAATATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGTGAGTGGGAAGAGGTTGAGAAGTATTTATCTGGGTTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAACAAAAATATCTGGAAGCACTTGATCGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGCTGGTGATTTAAAAATGTTCTCCACCTTCAATGAGGAGCTGTACAAAGAAATAACGCAGTTATTAACTCTTAATAATTTCAGGGAGAACGAGCAGCTGTCCAAGTACGGTGACACCAAAACTGCTCGAAGCATTATGCTGATAGAGCTGAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCCACCCTTAAGTCATCAAGACTGAGAACTTTAATCAATCAAAGTCTAAACTGGCAGCACCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCTCAGATCACACATGTGCACCTCCAAATGGTCCTCTGGCACCTACACCTGTCAATCTTCCAATTGCTGCAGTTGCAAAGCCCGTTGCTTATACTTCTCTTGGAGCTCATGGTCCCTTCCCACCGGCTGCTGCAACGGCCAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACGGCATCAACCATACCTGTCCCACAGAGCCAAGTGTCTATCTTGAAACGTCCTAGAACACCTCCTGCAACTTCTGCCATGGTTGATTATCAGAATACTGATCATGAACCACTAATGAAAAGGCTTCGTTCTGGTCATTCTGTAGAGGAGGTTTCTTATCCCTTGGCTCGACAAGCCTCTTGGTCACTGGATGATCTGCCAAGAACTGTGACTATGACATTGCAACAAGGATCCTCTGTGAAAAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCAAACAATGGAGAAATTACCCTCTGGGAACTCAGTTTGCGAGAAAAGTTGGTCACAAAGCCATTCAAAATCTGGGATGTGTCTGCATGTTCATTACCATTTCAGGCTGCTACAGTGAAGGATGCACCTATTTCTGTCAGTCGGGTCACATGGAGCCCTGATGGAAGTTTTGTAGGTATTGCTTTTACTAAACATTTGATTCACCTGTATGCTTACACCGGATCAAATGAGCTAACCCAGCGTATAGAGGTTGATGCTCATGTTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAACAAACAGCTGTGTATTGTAACTTGTGGGGATGATAAGTTGATAAAGGTATGGGATTTAAATGGACGCAAACTGTTCAGCTTTGAGGGGCACGAGGCACCTGTATATTCCATCTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCTTGGTTATATGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGCCACTGGTGCACTACAATGCTTTATAGTGCTGATGGAACTAGGTTATTTTCTTGTGGGACAAGTGAGGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATCAAGAGAACATACAATGGGTTTAGAAAAAAATCTGCTGGCGTTGTGCAGTTTGACACAACCCAAAACCGCTTTTTGGCTGCAGGTGAAGATGGTCAAGTTAAGTTTTGGGACATGGACAATGTTAATCTTGTTATAAGCACAGATGCCAATGGAGGATTACAGAGCCTTCCACGGTTAAGATTCAACAAGGAAGGGAATATTCTGGCGGTTACTACAGTGGACAATGGATTCAAGATACTTGCTAATGCTTCTGGTCTTAGATCTTTAAGAACCATTGAAACTCCCGGGTTTGAAGCATTGAGGTCACCCCTTGAATCAACTGCAATTAAGGTATCTGGCTCTTCTACTGTTAATATTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGCCGAAGTGTGGAAAAACCAAGAAGTGTGGAAGATGTAATAGAGAGAGCTACTAAACCATGGCAACTATCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGAAAGCACAGATTCATCCAGCAAGGTTGTTAGACTTTTATATACAAACTCTGGCGTTGGTATTTTAGCACTTGGTTCAAATGGTACCCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCTACAGCCAATGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATATCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCTTACGTTTTGTCTGCTTGTGGTGGAAAGGTTTCCCTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCTTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATCGCCATTGGGATGGAGGATTCAACCATTCATATCTATAATGTCAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAAAAGCGTATTACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCAATACAACTACCCGCAGGAAAGGCACCTGTTGGTGATACACGAGTACAGTTCCATTCTGATCAACTTCGTTTGTTGGTTGTCCATGAGACTCAGTTAGCAATATATGATGCTTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTCCATGCCCCAATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTGTGATTCCAACATTGGTGTGTTTGATGCTGATAGCTTGAGGCTTAGATGTCGAATTGCACCGTCAATATGCTTGTCACCGGCAGCTTTAAGTGGAAGTCCATCTTTGTATCCTCTTGTGGTCGCCGCACATCCACTAGAACCTAATCAGTTTGCTGTTGGGTTGACGGATGGATCTGTGAAAGTGATAGAACCAAGTGAATCAGAGGGTAAGTGGGGATCCTCCCCACCTATGGACAATGGAATAATGAATGGTAGAACAGCATCATCATCTACAACAAGCAACCACACTGCTGATCAGGCTCAAAGATGA 3393 0.4262 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILAGDLKMFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFSDHTCAPPNGPLAPTPVNLPIAAVAKPVAYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQSQVSILKRPRTPPATSAMVDYQNTDHEPLMKRLRSGHSVEEVSYPLARQASWSLDDLPRTVTMTLQQGSSVKSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVTKPFKIWDVSACSLPFQAATVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYAYTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSEDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQVKFWDMDNVNLVISTDANGGLQSLPRLRFNKEGNILAVTTVDNGFKILANASGLRSLRTIETPGFEALRSPLESTAIKVSGSSTVNISPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRSVEDVIERATKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSGVGILALGSNGTQKLWKWARNEQNPTGKATANVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVLSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKAPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLHAPISYAAYSCNSQLIYATFCDSNIGVFDADSLRLRCRIAPSICLSPAALSGSPSLYPLVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGSSPPMDNGIMNGRTASSSTTSNHTADQAQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01250 1130 SUPERFAMILY WD40 repeat-like 329 558 IPR036322 GO:0005515
Phco6g01250 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Phco6g01250 1130 MobiDBLite consensus disorder prediction 707 727 - -
Phco6g01250 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Phco6g01250 1130 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 914 1101 - -
Phco6g01250 1130 Gene3D - 762 1102 IPR015943 GO:0005515
Phco6g01250 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Phco6g01250 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Phco6g01250 1130 MobiDBLite consensus disorder prediction 1107 1130 - -
Phco6g01250 1130 Gene3D - 325 533 IPR015943 GO:0005515
Phco6g01250 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Phco6g01250 1130 SMART ctlh 34 92 IPR006595 -
Phco6g01250 1130 MobiDBLite consensus disorder prediction 1092 1130 - -
Phco6g01250 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1114 IPR027728 GO:0006355
Phco6g01250 1130 FunFam Topless-related protein 3 730 965 - -
Phco6g01250 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Phco6g01250 1130 SMART Lish 4 36 IPR006594 GO:0005515
Phco6g01250 1130 Gene3D - 534 672 IPR015943 GO:0005515
Phco6g01250 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 491 IPR001680 GO:0005515
Phco6g01250 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 490 949 IPR011047 -
Phco6g01250 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Phco6g01250 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Phco6g01250 1130 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 484 525 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 439 482 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 1051 1091 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 391 435 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 574 614 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 528 571 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Phco6g01250 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01250 Phco-Chr6 12622769 12630703 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01250 6 12622769 12630703 Phco6g01250 6 12622769 12630703 ECH
Phco2g02597 2 55758151 55766546 Phco6g01250 6 12622769 12630703 PCT