Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02597 ATGACTTCTTTGAGCCGAGAATTAGTGTTCCTGATACTCCAATTTTTGGAGGAGGAGAAGTTCAAGGAGTCCGTGCACAGGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTAACAGGGTTTACTAAAGTTGACGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAAAAATATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAATTTTCTCCACCTTCAACGAGGAACTATACAAAGAAATCACCCAGCTTTTAACTCTTAGTAATTTCAGGGAAAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATCATGTTGATAGAGCTAAAAAAGCTAATAGAGGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACATTGATCAATCAAAGTTTAAACTGGCAGCACCAGCTTTGCAAAAATCCTAGGCCAAACCCAGATATAAAGACTTTATTCAACGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCAATTGCTGCCGTTGCAAAGCCTGCAGTTTATAATTCAATTGGAGCTCATGGTCCCTTTCTCCCTGCCGCAGCAACTGCGAATGCTAGTGCTTTGGCTGGTTGGATGGTCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATGCCTGTCACACAGAATCAAGTGTCTATCCTGAAGCATCCAAGAACACCTCCAACAACTCCTGGCATGGTTGATTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTCTAGAGGAGGTTTCGTATCCTGCCACTCGACAAGCCTCTTGGTCACTGGATGATCTACCAAGAACAGTGGCAATGACATTGCAGCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCGCACCAAACCTTACTTCTTGTTGGTTCTAGCACTGGTGAAATTACACTTTGGGAACTTGGGTTGCGAAACAGGTTGGTCACAAAGCCGTTCAAGATATGGGATATCTCAGTGTGCTCATTACCATTTCAGACAGCTATCGTCAAAGATGCACATATTTCCGTTAGTCGTGTCACATGGAGCCTGGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATTCCTACATTGGATCAAATGAGCTGGCTCAGCGCATAGAGGTTGATGCCCATATTGGTGGTGTTAATGACCTGGCATTTGCACATCCAAATAAACAACTGTTTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTGACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAGGAGAACATTCAGTTTGTATTTTCAACTGCTATTGATGGCAAAATAAAAGCCTGGTTGTACGATAATGTGGGCTCTAGGGTTGACTATGATGCCCCAGGCCATTGGTATACCACACTGCTCTATAGTGCTGATGGAAGTAGGCTGTTTTCCTGTGGGACTAGTAAAGACGGAGAGTCATTTCTTGTTGAATGGAATGAAACTGAAGGAACTATTAAGAGAACATACAATGGGTTCAAAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAGAATCGCTTCTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGAGATGGACAGCATTAATCTTCTAACAAGCACTGATGCAGAGGGTGGATTACAGGCCCTTCCACTCTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTCACTACTGCAGACAATGGATTCAAAATTCTTGCAAATGTTAGTGGTCTTAGATCCTTAAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCATCTATTGACTCTGCTGCAATCAAGGCATCTGTCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTTAATGGAGGAGTTGACCCCACAGGTCGAAATGCAGAGAAACCTAGAACTGTGGAAGATGGAATAGATAGAGCTAAACCATGGCAGCTGGCTGAAATTGTTGATCCTGTTCAATGTCAGTCAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTCGACTCCTGTATACAAACTCTGGTGCTGGTCTATTGGCTCTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTAGTGAACAAAATCTCAATGGGAAGGCCACTGCCAGCATTGTTCCACAGCATTGGCAACCCAGCAGTGGTCTTCTTATGACTAATGATGTCTCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTTTGTCTGCCTGTGGTGGAAAGGTTTCGTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCATCTACCTTTCTGGCTTTCCACCCTCAAGATAATAACATCATAGCCATTGGGATGGAGGATTCAACAATTTACATTTATAATGTCAGAGTGGATGAGGTGAAATCCAAATTGAAGGGTCACCAAAAGCGAATTACTGGTTTCGCCTTTTCAACTTGCCTTAACATCCTGGTTTCATCTGGTGGTGATGCTCAACTCTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTCCTATACAACTGCCAGCAGGAAAGGCTCCTTTAGGTGATACTCGTGTGCAGTTCCATTCAGACCAAATCCGGCTACTGGTAGCCCATGAGACTCAGTTGGCAATATATGACGCCTCTAAGATGGATCGGATTCGGCAGTGGGTTCCTCAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAATAGTCAGTTAATATATGCTACATTTTGCGATGGAAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTGAGATGTCGTATTGCACTATCCACGTACTTTTCACCTGCGGCTTTAAGCGTGAACCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCAGCAGAGCCCAATCAATTTGCCGTTGGTTTGACAGATGGGTCCGTGAAAGTGATTGAGCCCAGTGAATCAGAAGGTAAATGGGGAACCAGTCCACCTATGGATAATGGAATGGTGAACGGTAGGACAGCATCATCATCTACAACAAGCAACCACACACCCGATCAGGCACAAAGATAA 3393 0.4356 MTSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKIFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFNDHTCTPPNGPLAPTPVNLPIAAVAKPAVYNSIGAHGPFLPAAATANASALAGWMVNASASSSVQAAVVTASTMPVTQNQVSILKHPRTPPTTPGMVDYQNADHEQLMKRLRPAPSLEEVSYPATRQASWSLDDLPRTVAMTLQQGSSVTSMDFHPSHQTLLLVGSSTGEITLWELGLRNRLVTKPFKIWDISVCSLPFQTAIVKDAHISVSRVTWSLDGNFVGVAFTKHLIHLYSYIGSNELAQRIEVDAHIGGVNDLAFAHPNKQLFIVTCGDDKLIKVWDLTGRKLFNFEGHEAPVYSICPHHKENIQFVFSTAIDGKIKAWLYDNVGSRVDYDAPGHWYTTLLYSADGSRLFSCGTSKDGESFLVEWNETEGTIKRTYNGFKKKSAGVVQFDTTQNRFLAAGEDGQIKFWEMDSINLLTSTDAEGGLQALPLLRFNKEGNLLAVTTADNGFKILANVSGLRSLRTVETPGFEALRSSIDSAAIKASVSSAVNVSPVNCKVERSSPVRPSPILNGGVDPTGRNAEKPRTVEDGIDRAKPWQLAEIVDPVQCQSVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWARSEQNLNGKATASIVPQHWQPSSGLLMTNDVSGVNLDEAVPCIALSKNDSYVLSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIYIYNVRVDEVKSKLKGHQKRITGFAFSTCLNILVSSGGDAQLCVWSIDTWEKRKSVPIQLPAGKAPLGDTRVQFHSDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPAALSVNQSVYPVVVAAHPAEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGMVNGRTASSSTTSNHTPDQAQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02597 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Phco2g02597 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Phco2g02597 1130 Gene3D - 563 675 IPR015943 GO:0005515
Phco2g02597 1130 SMART WD40_4 397 435 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 574 614 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 439 482 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 484 525 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Phco2g02597 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Phco2g02597 1130 FunFam Topless-related protein 3 731 965 - -
Phco2g02597 1130 MobiDBLite consensus disorder prediction 1107 1130 - -
Phco2g02597 1130 Gene3D - 831 1102 IPR015943 GO:0005515
Phco2g02597 1130 Gene3D - 319 562 IPR015943 GO:0005515
Phco2g02597 1130 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Phco2g02597 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Phco2g02597 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Phco2g02597 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Phco2g02597 1130 MobiDBLite consensus disorder prediction 1092 1130 - -
Phco2g02597 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Phco2g02597 1130 SUPERFAMILY WD40 repeat-like 343 655 IPR036322 GO:0005515
Phco2g02597 1130 SMART Lish 4 36 IPR006594 GO:0005515
Phco2g02597 1130 SMART ctlh 34 92 IPR006595 -
Phco2g02597 1130 SUPERFAMILY WD40 repeat-like 832 1093 IPR036322 GO:0005515
Phco2g02597 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Phco2g02597 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Phco2g02597 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1114 IPR027728 GO:0006355
Phco2g02597 1130 MobiDBLite consensus disorder prediction 705 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02597 Phco-Chr2 55758151 55766546 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02597 2 55758151 55766546 Phco2g02597 2 55758151 55766546 ECH
Phco2g02597 2 55758151 55766546 Phco6g01250 6 12622769 12630703 PCT