Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01093 ATGTGGTTTGCGACTTTCAGCAAAGAAAAAAATGTGGTTTCCGAATCCTATGATTGTTTGGTTCTGAGTGGTTGTGCTAGTGTTGGGTCGATGTCAACTGTGTCTAAAGATGACAACTTGGTGCTGTCTTCGGAGGACTCTTCTTGCCCAGAAGAGTCTGAGATCGAATTGGGTCTTGGGTTGAGCATCTCTGGCCCTTCTAAGTCTCACCACCATGTCCATGCTCATGCTCCTTCTCCTTATGCTAGGATTTTCACTGCTAAGGCTTTTCCTTCTTCAGCAACACCATCACCTTCCTCTTCTTCCTCTTCCTCTCCTAACATCACTGCTGGCACCAAGAGAGCTGCTGAATCTCTTGTTGCAAATAATCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGGACATATAGAGTGAATAGCTGCAATATCCATGCAAAATCAACAGAAGTATTCGACTCAGTGACTGAGAAGAGTAAGGGCAATAATACTGTGGTAAGGAAGAGTGCTGACAATGGCAATGATTATAACATTAATGCCAAAGAAAAAAGACAGATCAGGAGTTCCTTGTTCGTCAAGGTAAATATGGACGGGATACCTATTGGGAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCACAAACTTTGGAGGATATGTTTAACGAATCAACAACAGTCACCACTTGCAAAGGAGCAAATGGTGAGGATCATGGAATTATTATTGGAGGAGAAATGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTACGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGAGGATGTTCCTCAGCTCGGTGAGGAGGCTAAGAATAATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTAGAAGAAAACATCAGACAGAAATGCAAACCCATATAG 948 0.4325 MWFATFSKEKNVVSESYDCLVLSGCASVGSMSTVSKDDNLVLSSEDSSCPEESEIELGLGLSISGPSKSHHHVHAHAPSPYARIFTAKAFPSSATPSPSSSSSSSPNITAGTKRAAESLVANNRPSQVVGWPPLRTYRVNSCNIHAKSTEVFDSVTEKSKGNNTVVRKSADNGNDYNINAKEKRQIRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGANGEDHGIIIGGEMHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWRMFLSSVRRLRIMRTSEANGLAPRLEENIRQKCKPI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01093 315 MobiDBLite consensus disorder prediction 92 121 - -
Phco6g01093 315 SUPERFAMILY CAD & PB1 domains 184 292 - -
Phco6g01093 315 FunFam Auxin-responsive protein 184 304 - -
Phco6g01093 315 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 54 299 IPR003311 GO:0005634|GO:0006355
Phco6g01093 315 ProSiteProfiles PB1 domain profile. 189 296 IPR000270 GO:0005515
Phco6g01093 315 Gene3D - 184 306 - -
Phco6g01093 315 MobiDBLite consensus disorder prediction 92 112 - -
Phco6g01093 315 Pfam AUX/IAA family 85 303 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01093 Phco-Chr6 11023193 11027618 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco6g01093 AUX_IAA 7.2e-62 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01093 6 11023193 11027618 Phco6g01093 6 11023193 11027618 ECH
Phco2g01899 2 49578301 49581100 Phco6g01093 6 11023193 11027618 PCT