Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01899 ATGTCTTCTTCCTCTTCTTCTTCTTTGTATTCACTCTCCAACTTCAGTATTCCACTCTTCACACACGCTTCTCATTACACCGGGTGTTCTCCAATGTCTAAAGATGATAACTCTTCACAGGATTCTTCATCTGATATTGAATTGGCTCTCTCCTTGACCCTCTCTCCCTATGCCCCAGCTTCCTCATTCAGTGGGATTACTATTCTCACTTCTGGAACCAAGAGACCTGCCTCTATTTCAGATTCTGATTCTGTTCTTCCTGCTACCTCTCCCAGACAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAACTATAATAGCCATGCAAAGTCACCAGCCACGGAAGTTTTCAATTCTACAGTTGACAAAAGAGCAAGCACTAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGGAGTGATAGTAACAACACTGTTTCCAAGGAAAACGTAAATCTCAGGAATTCCCTATTTGTGAAGGTAAAAATGGATGGAATACCAATTGGAAGGAAGGTTGATTTGAATGTTCATGGTTCCTATGAAACCTTAGCTCAAACTTTGGAGGAAATGTTTGAAGAATCAACTACAGTCCTCACTAACAAAGTAGGATCAAATGGAGAAGATCATGGTACTATAGTTGGAGGAGAGGGGCTTTCAAAATGGCTGTATGGTTCTTCCGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGACTCAGAATCATGAGGACACATGAAGCTAATGGACTTGCTCCAAGATTGGAAAGAAGAATAATAGATCGAAATGCAAGCATATAG 858 0.4219 MSSSSSSSLYSLSNFSIPLFTHASHYTGCSPMSKDDNSSQDSSSDIELALSLTLSPYAPASSFSGITILTSGTKRPASISDSDSVLPATSPRQVVGWPPLGAYRMNNYNSHAKSPATEVFNSTVDKRASTSAGVRKSADGGSDSNNTVSKENVNLRNSLFVKVKMDGIPIGRKVDLNVHGSYETLAQTLEEMFEESTTVLTNKVGSNGEDHGTIVGGEGLSKWLYGSSDFVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTHEANGLAPRLERRIIDRNASI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01899 285 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 46 268 IPR003311 GO:0005634|GO:0006355
Phco2g01899 285 Gene3D - 153 276 - -
Phco2g01899 285 ProSiteProfiles PB1 domain profile. 158 266 IPR000270 GO:0005515
Phco2g01899 285 MobiDBLite consensus disorder prediction 119 149 - -
Phco2g01899 285 SUPERFAMILY CAD & PB1 domains 152 262 - -
Phco2g01899 285 Pfam AUX/IAA family 80 273 IPR033389 -
Phco2g01899 285 FunFam Auxin-responsive protein 153 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01899 Phco-Chr2 49578301 49581100 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco2g01899 AUX_IAA 2.1e-57 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01899 2 49578301 49581100 Phco2g01899 2 49578301 49581100 ECH
Phco2g01899 2 49578301 49581100 Phco6g01093 6 11023193 11027618 PCT