Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01080 ATGAAGTGTCTACGGTCAGGAGAGTCGTTTGGAGGAGCTGATGAAGTGTTTCCTTCATCTGGATCTCTTGCAAGTGCAACCAAGGACTTTTCAGCTAGTGAACACTCTTGCTTAGCTGAACACATTGATAAGAAGCAGGACACTGGGAACATAGAAGAAGCTGAATCATCCTTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTTTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGCATAGACATAGGTGTTGTGACTCCTAAGATTAAAATTGCCCTTTCTAGAAGCAGAGAACGCCGCAAGAGACATTCTCAAAATCATGCTGAACCGCAAATGTCAATACATTCTGTTGGCTTATTATTGGAATCTGTCTTCCTCAAAGCAAAATCTTTGCAGATTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTTTGGATATAGTGGAGTCTTCATTGCCCGAAGGCTTGCCCGATAATTTCGGTGCTGAATGTAAATTACAGGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGACTTATGGAAACTTGCTGATTGTCCACGTGAAGCTATTTTGTCTTACCGACGAGCACTGCTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTTTACAGTGGAGGAGAAGCCACACCGCCTAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAACAACATAGAAGAGGCTATACTTATCTTAATGATTTTGTTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTCTCATTTGCTCTGTCAGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTTCCACGGACAATTCATAGAAGTGAAAGGTACTATGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGATCTGGTAGCACTGGATTTTCTCAGAAAGTTGTTGAGTAGTAGAGAGGACCAAGACCATGTTCCTGGTTTGTTATTGGCTTCTAAGATTTGTTGTGAGAACTGTTCTCTTGCAGAAGAAGGAGTAACCTTCGCCAAGCGAGTGCTTCAGAACTTGGATGGCAGATGTAATCAGCTAGAAGATCATGCCAATTTCTTTCTTGGTGTCTCACTTTCAGCACAGTCAAAATTGGCTATTTCTGATTCTGAGATGTTTAAGAGACAATCTGAGGCACTTCATACCCTAGAAACTGCTGCCAGAACGAGAAACCCCCTTGTACTATATCATCTCAGTCTAGAATATGCAGAACAAAGAAAGTTGGATGCCGCACTTCAGTATGCAAAATGCTGTATAAAACTGGAAGCTGGTTCTAATATTAGAGGATGGCTGTTGTTAGCCCGGATATTGTCTGCTCAGAAACAGTTTTTGGATGCCGAATCTATCATTGATTCTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCAAGTTAAGGAATGCCATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCTGGAAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCACGATATTACTTATGTGTATATCAGTCTTTTACAGTGGCATGACGCAGAGGTGTGTCTTTCAAAATCCAAAGCCATCAAACCACTTTCTGCATCTAGATATCATGCAATAGGCATAATATACGAAGCAAAGGGCCATTACAAAGAAGCTCTAAAATCTTTTGGTGATGCTTTGGACATTGATCCTGGCCATGTCCTTAGCTTAGTCTCCAGTGCTGTAGTTCTTAAACGATGTAGTAGTCACTCAAATCCAGCAGTTAAAAGCTTTCTGATGGACGCGCTAAAGCAGGACAGGTTCAATGCTTCTGCTTGGTATAATCTTGCCCTTCTTCACAAAGCTGAGGGCACAGCATCATCCTTAGTTGAAGCTGCAGAATGTTTTCAAGCTGCACATGTTCTTGAAGAATCTGAACCTATTGAACCTTTCAGATGA 2136 0.4096 MKCLRSGESFGGADEVFPSSGSLASATKDFSASEHSCLAEHIDKKQDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKRHSQNHAEPQMSIHSVGLLLESVFLKAKSLQILERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLNKAVELLPDLWKLADCPREAILSYRRALLHQWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILILMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPRTIHRSERYYALALCYYGAGKDLVALDFLRKLLSSREDQDHVPGLLLASKICCENCSLAEEGVTFAKRVLQNLDGRCNQLEDHANFFLGVSLSAQSKLAISDSEMFKRQSEALHTLETAARTRNPLVLYHLSLEYAEQRKLDAALQYAKCCIKLEAGSNIRGWLLLARILSAQKQFLDAESIIDSALDQTGKWDQGDLLRTKAKLQIAQGKLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDITYVYISLLQWHDAEVCLSKSKAIKPLSASRYHAIGIIYEAKGHYKEALKSFGDALDIDPGHVLSLVSSAVVLKRCSSHSNPAVKSFLMDALKQDRFNASAWYNLALLHKAEGTASSLVEAAECFQAAHVLEESEPIEPFR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01080 711 SUPERFAMILY TPR-like 311 535 IPR011990 GO:0005515
Phco6g01080 711 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Phco6g01080 711 ProSiteProfiles TPR repeat region circular profile. 599 630 - -
Phco6g01080 711 SUPERFAMILY TPR-like 510 683 IPR011990 GO:0005515
Phco6g01080 711 Gene3D Tetratricopeptide repeat domain 543 709 IPR011990 GO:0005515
Phco6g01080 711 PANTHER PROTEIN NPG1 1 711 IPR043376 -
Phco6g01080 711 Pfam Tetratricopeptide repeat 602 632 IPR013105 -
Phco6g01080 711 Gene3D Tetratricopeptide repeat domain 133 542 IPR011990 GO:0005515
Phco6g01080 711 SMART tpr_5 669 705 IPR019734 GO:0005515
Phco6g01080 711 SMART tpr_5 134 167 IPR019734 GO:0005515
Phco6g01080 711 SMART tpr_5 565 598 IPR019734 GO:0005515
Phco6g01080 711 SMART tpr_5 319 352 IPR019734 GO:0005515
Phco6g01080 711 SMART tpr_5 599 632 IPR019734 GO:0005515
Phco6g01080 711 SMART tpr_5 438 471 IPR019734 GO:0005515
Phco6g01080 711 SMART tpr_5 473 506 IPR019734 GO:0005515
Phco6g01080 711 SMART tpr_5 509 542 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01080 Phco-Chr6 10910073 10914820 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01080 6 10910073 10914820 Phco6g01080 6 10910073 10914820 ECH
Phco2g01878 2 49414422 49417906 Phco6g01080 6 10910073 10914820 PCT