Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01878 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGATTGCAGAAGATGATGAAGTGTCTGTGTGTGAGGGAGTCGGTGAAAGGAGAAGATGAAACGGTCCCTTCCTCGGAGTCTCTTGCAATCAGGGAATTTTATTCTTCAACAGCGAGTGGGCGTTCTGGCCTCGACGGAATTGAGATGTTGGGGTCTGATTCTGGTAACATAGACGAAACTGATTTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTAGTGCTTTGTTAGGAAGAGATGAATATCGTAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCCCAAAAAACATTCCTATTATTATTCTACTCCCCCAATGTCCATATACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAAGCGAAATGCTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTAAAGTTATTCTGGACACAATTGAGTCTTCATTACCTGAAGGCTTGCCACAAAACTTTGGCAATGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCGGATTTGTGGAAACTTACTGATTCTCCCCGTGATGTGATTTTGTCTTACCGTCGTGCACTCCTTCACCAATGGAATCTTGATGCAAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCGAATCTTCGTTCCCATATGGACAGCTCTTTTGTACCTAGAAATAACTTAGAAGAGGCCATACTCCTTTTAATGATTTTGCTAAGAAAAATTTCTCTAAATAAACTTGAGTGGGATCCATCAATTTTGGACCACCTTGCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGTACTGTCAATCGTAGAGAAAGGTACCATGCCTTATCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCATTGAATCTTCTAAGGAAACTGTTGAGTAAAGAGGACCCAAAGCATGTTCCTTCTTTGTTAATTGCTTCTAAGATTTGTTGTGAGAACCCTGATCTTGCAAAAGACGGGGCAAGCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGAAGATGTGATCAGTTGGAAGGTCTTTCTAGTTGCTTACTTGGTGTTTCACTTTCAACACAATCAAAATTTGCTATTTCTAATTCTGAGAGGGTTGAGAGACAATCTGAGGCACTTCATTTTCTGGAAACTGCACACAAAGTGACCGGAATGAATAACCCCCTTGTAATATACTGTTTGAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCGGCACTTCATTATGCAAAATGCTTGCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTGTTAGCCCGTATATTATCAGCTCAAAAACAGTTTTTGGATGCCGAATCTATTATCAATGAGGCCTTAGATCAGACTGGAATATGGGATCAAGGAGAGTTACTGCGAACAAAAGCTAAACTACAAATTGTGCAGGGCCAGTTGAAGAGTGCCATTGAAACATGTACTCAGCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTCGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCCAGGAACATGGAAATAGAAATATGGCATGATCTTGCTTATCTGTACATAAGTCTGTCACGTTGGCAAGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACTATGTATGAAGCAAAGGGCGTTCACAAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAATATAGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTTCTTAGACGGTACAGTAATCGGTCAAATCCTGCAATCAGAAGCTTTCTGATGGACGCACTACGGCATGACAGATATAATGCTTCCGCATGGTATAATCTTGGCATTTTTCACAAGGACGAGGGAACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 2178 0.4178 MGSRVKQGRRLQKMMKCLCVRESVKGEDETVPSSESLAIREFYSSTASGRSGLDGIEMLGSDSGNIDETDLSLRESGILDNEEASALLGRDEYRKGNIEAALRVYEKINIGAVTSKMKISLAKSRERPKKHSYYYSTPPMSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDTIESSLPEGLPQNFGNEGKLQETLSKVVELLPDLWKLTDSPRDVILSYRRALLHQWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYHALSLCYYGAGKDLVALNLLRKLLSKEDPKHVPSLLIASKICCENPDLAKDGASLARKVLENLDGRCDQLEGLSSCLLGVSLSTQSKFAISNSERVERQSEALHFLETAHKVTGMNNPLVIYCLSLECAEQRKLDAALHYAKCLLNLEAGSSVKGWLLLARILSAQKQFLDAESIINEALDQTGIWDQGELLRTKAKLQIVQGQLKSAIETCTQLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYLYISLSRWQDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGVHKEALKAFRDALNIDPGHVPSLISTAVVLRRYSNRSNPAIRSFLMDALRHDRYNASAWYNLGIFHKDEGTMLEAAECFETANFLEESAPVEPFR 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01878 725 Gene3D Tetratricopeptide repeat domain 561 720 IPR011990 GO:0005515
Phco2g01878 725 SUPERFAMILY TPR-like 434 555 IPR011990 GO:0005515
Phco2g01878 725 SMART tpr_5 582 615 IPR019734 GO:0005515
Phco2g01878 725 SMART tpr_5 686 719 IPR019734 GO:0005515
Phco2g01878 725 SMART tpr_5 149 182 IPR019734 GO:0005515
Phco2g01878 725 SMART tpr_5 616 649 IPR019734 GO:0005515
Phco2g01878 725 SMART tpr_5 526 559 IPR019734 GO:0005515
Phco2g01878 725 SMART tpr_5 490 523 IPR019734 GO:0005515
Phco2g01878 725 Gene3D Tetratricopeptide repeat domain 66 560 IPR011990 GO:0005515
Phco2g01878 725 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Phco2g01878 725 SUPERFAMILY TPR-like 527 712 IPR011990 GO:0005515
Phco2g01878 725 ProSiteProfiles TPR repeat profile. 686 719 IPR019734 GO:0005515
Phco2g01878 725 PANTHER PROTEIN NPG1 15 725 IPR043376 -
Phco2g01878 725 Pfam Tetratricopeptide repeat 617 648 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01878 Phco-Chr2 49414422 49417906 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01878 2 49414422 49417906 Phco2g01878 2 49414422 49417906 ECH
Phco2g01878 2 49414422 49417906 Phco6g01080 6 10910073 10914820 PCT