Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01049 ATGGATTTTGATTCATCTTTCTTCCAGTACCAAAGCCTTAACACTCCCTTTCTAAATTCTTCTTTGTGTGCAGAACCATTCCATTGGGAGGACTTTTTTCTCTTCAATGAAGAAAACACCGCCACCCTTGATGATAATCCCTTCACCTTCAGTGACCACTCACAGATCAAGGAATCATCCTCGGATTCCAACTCTTCAGGCTCTTTGGTCAGCAGTGAGTCACAGCTGGAAGTGTCCTCCAATTTAACTCATGCAAGGCAAGGCCAAGTGCTCCAAGAAGCAGATGCATCAGCCCCTCCAAAGGAGAGCATCAAAGAGAAGAGACCCTTTAGGGGAGTGAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAGATAAGAGACTCCACAAGAAATGGGGTTAGAGTGTGGATTGGAACATTTGACACAGCAGAGGCTGCAGCACTGGCCTATGACCAAGCAGCTTTGTCAACAAGAGGTTCCATGGCAGTGCTGAACTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGGCCAACAAGCCATGGGAAGATGGTTCCTCACCAGTGTTGGCACTCAAGAGGAAACACACCATGAGAAGGAAGTCCAAAGCCACAAACAAAAAGGCCAAAAGGGATCACCACGGAATGGAGTTGGAGAATGTTCTTTCACAAAATGTGTTGGTGTTGGAGGATTTGGGCTCTGAATACTTGGAGCAGCTTCTTAGCTTAACTTCTTCTTCGTCTTCTTCTTCTGATCATTTGCTTTGCTAG 774 0.4638 MDFDSSFFQYQSLNTPFLNSSLCAEPFHWEDFFLFNEENTATLDDNPFTFSDHSQIKESSSDSNSSGSLVSSESQLEVSSNLTHARQGQVLQEADASAPPKESIKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMANKPWEDGSSPVLALKRKHTMRRKSKATNKKAKRDHHGMELENVLSQNVLVLEDLGSEYLEQLLSLTSSSSSSSDHLLC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01049 257 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Phco6g01049 257 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Phco6g01049 257 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Phco6g01049 257 CDD AP2 110 168 IPR001471 GO:0003700|GO:0006355
Phco6g01049 257 PANTHER DNA-BINDING DOMAIN 66 248 IPR044808 GO:0003700|GO:0009873
Phco6g01049 257 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Phco6g01049 257 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
Phco6g01049 257 MobiDBLite consensus disorder prediction 87 110 - -
Phco6g01049 257 FunFam Ethylene-responsive transcription factor 2 108 168 - -
Phco6g01049 257 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
Phco6g01049 257 SMART rav1_2 109 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01049 Phco-Chr6 10458931 10459704 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g01049 AP2 2.5e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01049 6 10458931 10459704 Phco6g01049 6 10458931 10459704 ECH
Phco2g01849 2 49077661 49078347 Phco6g01049 6 10458931 10459704 PCT