Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01849 ATGGATTTAGATTTTGATTCTCATTTTTTTTCAAACCAAAACCTTAACTTCTTCGAAAACGCTGGAGACCCTTTTTCCTGGGACTACAATTTTGACGACATCTTCAACTTCAGTGACGACCAAACCAAGGAATCATCTTCCACGTCCAACGTTTCCGGCTCTGTGGGCAGCGTCGAGTTACAAGAAGTATCGTCCAACAACACAATCTACGAAGAAGAACCCAAAGAAACAGAGCCACTGGCGCCGCCGGCGCCGGCGAAGGAGGGTAGGGTGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATTCGACCCGAAACGGCGTTCGGGTGTGGATTGGAACGTTCGACACGGCGGAAGCGGCGGCTCTGGCTTATGACCAGGCGGCGTTCTCGACAAGGGGGTCTCTGGCGGTGCTGAATTTCCCGGAAGAAGTAGTGAGAGAGTCCCTGAAAGACATGCCGAGTAAGCCTTGGGAGGAAGGTTCTTCCCCTGTTTTGGCGCTCAAGAGAAAGCACACTATGAGGAGAAAGTCCAGTTTGAAAAAGAAGAAAAGTAAAAACGATGGCAGGGAGCAGTTAGAGTTCTGTGCCACATCGCAGAATGTGCTGGTGTTCGAGGATTTGGGCGCTGAGTATCTAGAACAGCTTTTGAGTTTGACTTATTAG 687 0.5051 MDLDFDSHFFSNQNLNFFENAGDPFSWDYNFDDIFNFSDDQTKESSSTSNVSGSVGSVELQEVSSNNTIYEEEPKETEPLAPPAPAKEGRVYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRRKSSLKKKKSKNDGREQLEFCATSQNVLVFEDLGAEYLEQLLSLTY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01849 228 PANTHER DNA-BINDING DOMAIN 52 224 IPR044808 GO:0003700|GO:0009873
Phco2g01849 228 MobiDBLite consensus disorder prediction 41 87 - -
Phco2g01849 228 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Phco2g01849 228 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Phco2g01849 228 ProSiteProfiles AP2/ERF domain profile. 91 149 IPR001471 GO:0003700|GO:0006355
Phco2g01849 228 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Phco2g01849 228 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Phco2g01849 228 SMART rav1_2 91 155 IPR001471 GO:0003700|GO:0006355
Phco2g01849 228 FunFam Ethylene-responsive transcription factor 2 90 150 - -
Phco2g01849 228 MobiDBLite consensus disorder prediction 41 68 - -
Phco2g01849 228 SUPERFAMILY DNA-binding domain 91 150 IPR016177 GO:0003677
Phco2g01849 228 Pfam AP2 domain 91 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01849 Phco-Chr2 49077661 49078347 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01849 AP2 2.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01849 2 49077661 49078347 Phco2g01849 2 49077661 49078347 ECH
Phco2g01849 2 49077661 49078347 Phco6g01049 6 10458931 10459704 PCT