Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01048 ATGGAAGGAGGAAGATCATCGGTTTCCAATGGAAACGTTGAGGTTCGGTATAGAGGGATTCGGAGAAGGCCATGGGGTAAGTTTGCTGCAGAGATTCGTGACCCTACAAGGAAAGGGACTCGGATATGGCTTGGAACCTTCGACACTGCAGAACAAGCTGCACGAGCGTATGATGCTGCTGCTTTTCATTTTCGTGGCCACAGAGCCATTCTCAACTTCCCAAATGAGTATCAGTCACCTGATCCAAACTCTTCTTTGCCTATGCCTTTAACAGTTCCTCCTTCTTCCTCTTCCTCTTCCTCTTCTTCTTACTCAATGGATAACCTTGCGGGACCTAGTTTTTCTGGAGAAATGATGCAAGCTGATGATATTTTTGAGTTGGAGTTCTTGGACAATAAGTTGCTTGAAGAACTCCTTCAGGAAAACAGACATCTCTTCAAGTGA 444 0.4527 MEGGRSSVSNGNVEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSPDPNSSLPMPLTVPPSSSSSSSSSYSMDNLAGPSFSGEMMQADDIFELEFLDNKLLEELLQENRHLFK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01048 147 PANTHER DNA-BINDING DOMAIN 14 107 IPR044808 GO:0003700|GO:0009873
Phco6g01048 147 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Phco6g01048 147 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Phco6g01048 147 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Phco6g01048 147 MobiDBLite consensus disorder prediction 73 108 - -
Phco6g01048 147 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Phco6g01048 147 MobiDBLite consensus disorder prediction 76 108 - -
Phco6g01048 147 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Phco6g01048 147 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Phco6g01048 147 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Phco6g01048 147 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Phco6g01048 147 FunFam Ethylene-responsive transcription factor 2 15 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01048 Phco-Chr6 10434629 10435072 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g01048 AP2 9.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01848 2 49058668 49059108 Phco6g01048 6 10434629 10435072 PCT