Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01848 ATGGAGGGAGGGAGAGGAGTTGTGAATGGAAACGCTTCTAACGCAGAGGTTATTAGGTACAGAGGGATTCGTAGAAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGAAAAGGTGCTCGAATATGGCTTGGAACATTTGACACTGCTGAACAAGCTGCACGTGCTTACGATGCTGCTGCTTTTTATTTTCGGGGTCACAAGGCCATACTCAACTTTCCTAATGAGTATGGTCACACCACTCCTAATAATCCTATCTCGTTTTCAACTTCACTGCCTCTTCATTCTTCTTCTTCTTCTTACTCTGGTGGCGAGGGTTCGTCACAACAACAGCGAAATGGTGATGTAACTTTTGAATTGGAATACTTGGACAATAAGTTGTTGGAAGAACTCCTTCAGGCGCCTGATGGTTCAGGCAACGACTCCAATTAA 441 0.4512 MEGGRGVVNGNASNAEVIRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFYFRGHKAILNFPNEYGHTTPNNPISFSTSLPLHSSSSSYSGGEGSSQQQRNGDVTFELEYLDNKLLEELLQAPDGSGNDSN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01848 146 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Phco2g01848 146 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Phco2g01848 146 Pfam AP2 domain 19 70 IPR001471 GO:0003700|GO:0006355
Phco2g01848 146 MobiDBLite consensus disorder prediction 83 118 - -
Phco2g01848 146 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Phco2g01848 146 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Phco2g01848 146 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Phco2g01848 146 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Phco2g01848 146 PANTHER DNA-BINDING DOMAIN 19 135 IPR044808 GO:0003700|GO:0009873
Phco2g01848 146 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Phco2g01848 146 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01848 Phco-Chr2 49058668 49059108 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01848 AP2 2.8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01848 2 49058668 49059108 Phco2g01848 2 49058668 49059108 ECH
Phco2g01848 2 49058668 49059108 Phco6g01048 6 10434629 10435072 PCT