Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01013 ATGTCAATAAGAAAATTTCTAAAAGCCTACATGACTACAACAAGGGACTACAGAGAGCTACACTTGGACCACAGTGAGACATGGCATGTGCATGCCAGCTTTGCAGCTGCCAAAGAAACATGTAGTTTGTTATCTGTGCTTTCTGCAGTCTCTTTTAGGTGGAACTTGCTTGGTGGCTTAGGTGAAACATTCCAGAATAATTATACTGTTCTTTTCTCCTTTTGTGCAATCGAACGGACAAGTGATACTCCCCGATTCATACTCTACCATCTGCATGTTCCTGTAACCTTTTTAGTTTTCCAGAATCACGAAGGAACTTGCTCAAGAGCACGACATCACAAGGAGATTGATCAAAGGAAAAGAAGTTTGTTTATGCATAAACTAAGGAAGAGAATAGTGTCTGCTTGGATGCTGATGCTGAGGGGAATGAAGCCTGGTCCGAAATCATTCAGAAGAGTAATGTCTGAGACTCCTTACATGAATGATCTCGAACCAGACGACATTCCCCTCAACTTTTTATGTATATATGGCAGACAGGGGAAGGGTGGGAGGTTAAAGGCGTGGAAAGCAAATAAAATAAAATGTGGAGGTGTCTCCCTCTCTCATCCTTTACGAAAACCTAAATTCTGCACTGCAACGTTCTCTTCACATCCAAAACGCCCCGTTGTTCTTCTCTCTCCTTCCTCCGAAGCTTCGAGAATCACGCTGGTGCAGGGTTTTGTTTTAGGGTATTGGAAGTTGCGGAGTTTGATTTTTGGGTTTTTTGCTGGGATGTCTGGAGAAGTTTATGATGGACAAGATGCTGGCTATGTGCCTGAGAATCCTGAGTTTCCGCAAAATCATTCTGAGGAACATGATGGAGGAAATGTGATTGATGACTCAGGGTTTCCGCAACTGCAGCCCGATGAAATTGATGAGGCCAATTTGGCCGAGGATGCTGATGTTCCTGAAAACAATTTTGATGAGAATGATGGAGAAGGTTTGCCTGAAAACCCTGATTTTCCTCCGCAAGAACATGCTGAGGAACAACATGGTGAAGGAGACACGACTGAGAATTTTGACTCTGAGGAAAAACAGGGATCTCAGGAGGAGTTGAAAGGAGGTGAAGTAAAAAAGTGGCCAGGGTGGCCTGGGGAGAATGTTTTCAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGTCGTAAAGGCGAGTTTATTAGGAAAATTACTGAAGAGAGTAAGGCTCGTATAAAAATTCTTGATGGTCCCCCTGGAACTGCAGAAAGAGCTGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCACCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAGGTTGTCAATGTAGAGCCTCATCCTGCTGATGCTGCATCAGGTGCAGCACGCACCGTTGTTACAAGACTTCTAGTGGCAGATACTCAAGCAGGGAGCTTGATTGGGAAGCAGGGAGCCACTATAAAATCCTTTCAAGATTCCACAGGTTGCAATATACGTGTTCTTGGTTCAGAACACCTCCCAGTTTTTGCTCTGCGAGACGATAGTGTTGTTGAAATACAAGGAGAATCTTCAGGGGTTCACAAGGCCGTTGAACTTGTTGCAGTTCATCTACGTAAATTCTTGGTTGACCGCAGCATAGTTGGTGTATTTGAAACACAGATGCAAAGGCCAGATGTTCGAGCAAACCAGAATGTGCCGCATGGCCCACCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCCAGCTCCTGGACCTGGTAGTGGTGGTGGACCTGCTTTCCCACCCAATCCTCAGTATATGCCCCCTTCCCATAACTATGATAATTACTACCCTCCTGCTGACCTGCCTCCCATGGACAAGCACCTTCATCAGGGTCCTGCACCTGCCTATGGAAGAGATGCTTCCATAGGAATTCATTCATCCAGTGTGCAACCGCAACATTCTGTTGTGACTAAGGTCACGCAGCACATGCAAATTCCTCTGTCCTATGCAGATGCTGTTATTGGAGCATCAGGGACAAATATCAGCTACATCCGTCGTGCCAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCAGGAGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGAATTTCATGGCTGAAGCTGCTAGTGCAACTCAGGATCATATGGGGGGATCAATGAACCAAGGTTACAATTCCTATCCTACCAATGCTCCTGTCTACGCATCTCCGCCCTCAGGCGCTGCTGGTCATGCAGGCCATGTACCTTCCGCAGATTATGGACCCGTTTATGGCACCAATTATGGCTATTGA 2358 0.4597 MSIRKFLKAYMTTTRDYRELHLDHSETWHVHASFAAAKETCSLLSVLSAVSFRWNLLGGLGETFQNNYTVLFSFCAIERTSDTPRFILYHLHVPVTFLVFQNHEGTCSRARHHKEIDQRKRSLFMHKLRKRIVSAWMLMLRGMKPGPKSFRRVMSETPYMNDLEPDDIPLNFLCIYGRQGKGGRLKAWKANKIKCGGVSLSHPLRKPKFCTATFSSHPKRPVVLLSPSSEASRITLVQGFVLGYWKLRSLIFGFFAGMSGEVYDGQDAGYVPENPEFPQNHSEEHDGGNVIDDSGFPQLQPDEIDEANLAEDADVPENNFDENDGEGLPENPDFPPQEHAEEQHGEGDTTENFDSEEKQGSQEELKGGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEESKARIKILDGPPGTAERAVMVSAKEEPDRTIPPAVDGLLRVHKQVVNVEPHPADAASGAARTVVTRLLVADTQAGSLIGKQGATIKSFQDSTGCNIRVLGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAVHLRKFLVDRSIVGVFETQMQRPDVRANQNVPHGPPPHQPWGPPQGFPAPGPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPAPAYGRDASIGIHSSSVQPQHSVVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASATQDHMGGSMNQGYNSYPTNAPVYASPPSGAAGHAGHVPSADYGPVYGTNYGY 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01013 785 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 371 749 - -
Phco6g01013 785 MobiDBLite consensus disorder prediction 267 373 - -
Phco6g01013 785 Coils Coil 716 736 - -
Phco6g01013 785 Gene3D K Homology domain, type 1 647 735 IPR036612 GO:0003723
Phco6g01013 785 MobiDBLite consensus disorder prediction 573 608 - -
Phco6g01013 785 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 649 730 IPR036612 GO:0003723
Phco6g01013 785 ProSiteProfiles Type-1 KH domain profile. 470 539 - -
Phco6g01013 785 CDD KH-I_PEPPER_like_rpt3 659 727 - -
Phco6g01013 785 CDD KH-I_PEPPER_rpt2_like 472 544 - -
Phco6g01013 785 SMART kh_6 378 451 IPR004087 GO:0003676
Phco6g01013 785 SMART kh_6 469 544 IPR004087 GO:0003676
Phco6g01013 785 SMART kh_6 658 728 IPR004087 GO:0003676
Phco6g01013 785 Pfam KH domain 661 724 IPR004088 GO:0003723
Phco6g01013 785 Pfam KH domain 473 539 IPR004088 GO:0003723
Phco6g01013 785 Pfam KH domain 382 434 IPR004088 GO:0003723
Phco6g01013 785 MobiDBLite consensus disorder prediction 335 370 - -
Phco6g01013 785 ProSiteProfiles Type-1 KH domain profile. 659 723 - -
Phco6g01013 785 CDD KH-I_PEPPER_rpt1_like 379 447 - -
Phco6g01013 785 ProSiteProfiles Type-1 KH domain profile. 379 446 - -
Phco6g01013 785 MobiDBLite consensus disorder prediction 305 328 - -
Phco6g01013 785 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 464 552 IPR036612 GO:0003723
Phco6g01013 785 Gene3D - 379 548 - -
Phco6g01013 785 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 371 434 IPR036612 GO:0003723
Phco6g01013 785 MobiDBLite consensus disorder prediction 563 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01013 Phco-Chr6 9986802 10003953 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01815 2 48686158 48691423 Phco6g01013 6 9986802 10003953 PCT