Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01815 ATGGCTCACATGTTGAGAAAAGAGATATCCTTCTGCTTCTGCCCCTTCTCTTCTCTCACCAATCATAAAACATACCTCATGGCCGAGCACGGTTTTGATGGACATGATGAAGGATATGTGCCTGAGGACCCTAATTTTACTCATAATCATTCTGATGAACATGATGTAGGGACTGTTATTGATAGCTCTGGATTTCCTCACCTGCTGCCTGATGAACACGATGCAGTCGATTTGGTGGAGGATGCCGATTTTCCTCAGAATCATTTTGTTGAGCATGAACATGAACATGATGTTGGAGGATTGCCCGGGGACACGGATTCTCCTCAGCAGGAGCATGTTGAGGAAGACCATGGTGCTGGAGATATGTCTGAGAATTTTGATTCTTCGCCGATACAGGGATCCGAGGTTGTTTTGAAAGGAACTGAAATAAAAAAGTGGCCGGGTTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGTGAGTTTATAAAGAAAATTACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCGCCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGGCTCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAGCAGGTTATCAATGTTGACCGTGACCTTGCAGATACCGCATTGGCTGCTGGACGATCTGTTGTTACCAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGCTCTGGTTGCACCATACGAGTTCTTGGATCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGATTCTACTGGTGTTCACAAGGCAATTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGATCGCAGCATAGTTGGAGTTTTTGAGACACAGATGCAAATATCAGATGTTAGAGCTAACCAGAATGGACCGCCACATCAAAATTGGGCTCCTCCTCCTCAAGGGTTTCCTGCTCCTGGTGGTGGTGGTGGAGGCTCTGCTTTTGCTCCTAATCAACAATATATGCCACCTGCACATCACTATGATAGTTATTACCCACCCACTGAGTTGCCTCCCATGGATAAGCACCTCCATCAAGGTCCACCACCTGCCTATGCAAGGGATGCTTCTGTGGGAATTCATTCATCAAGTGCACAACCACAGCAATCTCTTGTTACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCGTATGCAGATGCTGTTATTGGAGCATCCGGCACTAATATCAGCTATATTCGTCGCGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTTCCAGGGGAGATGACTGTCGAGATGAGTGGGACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGAACTTCATGGCTGAAGCTGCAAATGCGACACAGGATCCAATGAGTGGATCAGTCAGCCAGGGTTACAGTGCCTATCCAACTAATGCTCCGGTTTACGCATCTCCCCCCTCTAGCACTGGTGCGCATACAGGCCATGTGCCTTCTGCAGACTACGGGTCCGTATATGGCACCAATTATGGGTATTGA 1665 0.4637 MAHMLRKEISFCFCPFSSLTNHKTYLMAEHGFDGHDEGYVPEDPNFTHNHSDEHDVGTVIDSSGFPHLLPDEHDAVDLVEDADFPQNHFVEHEHEHDVGGLPGDTDSPQQEHVEEDHGAGDMSENFDSSPIQGSEVVLKGTEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRLIPPAVDGLLRVHKQVINVDRDLADTALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAIELIAVHLRKFLVDRSIVGVFETQMQISDVRANQNGPPHQNWAPPPQGFPAPGGGGGGSAFAPNQQYMPPAHHYDSYYPPTELPPMDKHLHQGPPPAYARDASVGIHSSSAQPQQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANATQDPMSGSVSQGYSAYPTNAPVYASPPSSTGAHTGHVPSADYGSVYGTNYGY 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01815 554 CDD KH-I_PEPPER_rpt2_like 245 317 - -
Phco2g01815 554 ProSiteProfiles Type-1 KH domain profile. 152 219 - -
Phco2g01815 554 ProSiteProfiles Type-1 KH domain profile. 428 492 - -
Phco2g01815 554 CDD KH-I_PEPPER_like_rpt3 428 496 - -
Phco2g01815 554 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 147 206 IPR036612 GO:0003723
Phco2g01815 554 MobiDBLite consensus disorder prediction 94 130 - -
Phco2g01815 554 Coils Coil 485 505 - -
Phco2g01815 554 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 239 326 IPR036612 GO:0003723
Phco2g01815 554 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 144 514 - -
Phco2g01815 554 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 419 499 IPR036612 GO:0003723
Phco2g01815 554 ProSiteProfiles Type-1 KH domain profile. 243 312 - -
Phco2g01815 554 CDD KH-I_PEPPER_rpt1_like 152 220 - -
Phco2g01815 554 SMART kh_6 151 231 IPR004087 GO:0003676
Phco2g01815 554 SMART kh_6 242 317 IPR004087 GO:0003676
Phco2g01815 554 SMART kh_6 427 497 IPR004087 GO:0003676
Phco2g01815 554 Pfam KH domain 246 312 IPR004088 GO:0003723
Phco2g01815 554 Pfam KH domain 430 493 IPR004088 GO:0003723
Phco2g01815 554 Pfam KH domain 155 207 IPR004088 GO:0003723
Phco2g01815 554 Gene3D - 152 321 - -
Phco2g01815 554 Gene3D K Homology domain, type 1 415 504 IPR036612 GO:0003723
Phco2g01815 554 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01815 Phco-Chr2 48686158 48691423 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01815 2 48686158 48691423 Phco6g01013 6 9986802 10003953 PCT