Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01003 ATGACGATGAAGAGGCTGGTGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAGGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGAAGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAAGCACCTGTAGCTATCCCCTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACTGTCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCACTAGGCTTGCAGGGCTCTAGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGTCAAGATAGTTCATGCTCACCTGACGCTTCAAACAAGTCTGCAAAGAGTGCGGGACAGAGTTTGTCACCTTGTAAAAATAGTCAATCCATATGCAATAGAGGACCACAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTCAAGTCTAATGTGCAAGCGTCTAATGCTAAACCCGAATCCGTGAAGGTAACTGACAGTGATACTAAAGTGCTGAAAGCCAAAATTAAGGAAAATAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGCCTCTCTAGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTAATGACAGTAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCGGTCTCATTTATCCAAAAATTGTTAGTGAAGAAACTGGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGCCACAGAATTCCTGCAACCATAGGATCCTCAGGGAAAGACTTTGTGATGATCCTAACCTATGGTCGGAAGGTCCTACACCCTTGA 1290 0.4171 MTMKRLVRVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITEEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAPVAIPSVLLPARRKERSLSSLVVSTPRVSTLSTMTGRRTKPTRKALGLQGSSFSVEKLIKKEEELLEDRQDSSCSPDASNKSAKSAGQSLSPCKNSQSICNRGPQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQASNAKPESVKVTDSDTKVLKAKIKENKRKAKVEDEKISTDHASLDTAKPNKLRRVRPKKEPVFGESRISPQAVLDANDSNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLVKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVLHP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01003 429 CDD RING-HC_PCGF 18 61 - -
Phco6g01003 429 SMART ring_2 20 60 IPR001841 -
Phco6g01003 429 SUPERFAMILY RING/U-box 15 85 - -
Phco6g01003 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Phco6g01003 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 425 IPR044807 GO:0004842
Phco6g01003 429 MobiDBLite consensus disorder prediction 161 202 - -
Phco6g01003 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Phco6g01003 429 MobiDBLite consensus disorder prediction 167 202 - -
Phco6g01003 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Phco6g01003 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01003 Phco-Chr6 9847235 9851695 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01810 2 48605434 48611766 Phco6g01003 6 9847235 9851695 PCT