Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01810 ATGCTGGAACAAGAGGTTCTCTCGATTCAGAACATCCACAAAGCAACACAAACTCCCTCTGCCAAATCCACCATAACCCACGTCAAATCCTCTCGAATCTCACCGACCCATTACCTTTTCCCACCCGTTTTCCTCCTTCCCCACCGATCGCTGTTGCTGCAATACCCACCGTTACCAACACTTCCATCCATTCCCAAGAGCTTCTTCGTTCGCCGTTCCACCCTTTTCCACACGAGTAGTTCGTGCGAGCGTGCAAGAAAATTAAGGAGCATGTCGAATCAGGTGGCGAAGGTGCGGAGGAACACGATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTATGGATGAGGAATTGGAAAGTTGTCCAATATGCAGCATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCATTAAAGGGAAGAAAGGTGAAAGCACCTGAAATTGTGGCCTCAATACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTCAACACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAGTGGTCTGCGGTCTACTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGAGTTACTGGAAGATCATCCTGGGAGTTCAAGCTCACCTGAAACTTCAAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCCGCACCCAACAAGGGATCAGAGAATGGTGCCGAACCATGGGATACAAAATTGGATCTCTGGAAGCCTTTGAATTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGGTCTGATGCTAAATTAGAAATCACTCAAGTAAATGAGAGCGACTCTCAAGTGCAGAAAACTAAAACTAAGGAAAATAAACGTAAGGCAAAAGTTGAGGATGAAAAGATTATCCCTTATCCTGCCTCTTCAGATACAGCAAAACCCAATAAATTGCGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCAGGAGAATCAAGCATATCACCCCAAGCTGTGCTGGATTCTGCCACTAGTAGTAGACTCTCTAGGACTGGTCCAATCTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGGAGGAGATGCACCCTTGCCACAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACATAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAATCAGTGCTTCCTACATTGCGTCTATATAATTTGGTTGAGTTGTGGCTGGATACAGCATCCACGTCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTTTTGGCTTATGCTCGGAAGCCTCCACACCCTTGA 1560 0.4474 MLEQEVLSIQNIHKATQTPSAKSTITHVKSSRISPTHYLFPPVFLLPHRSLLLQYPPLPTLPSIPKSFFVRRSTLFHTSSSCERARKLRSMSNQVAKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKIMDEELESCPICSIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEIVASIPLPARRKERSLSSLVVNTPRVSTQATMTGRRTKPSRKASGLRSTSFSIEKPIKKEEELLEDHPGSSSSPETSNKFAQNSGQSMSPCEGSQSAPNKGSENGAEPWDTKLDLWKPLNCLVEVASRSKSFKSHVQGSDAKLEITQVNESDSQVQKTKTKENKRKAKVEDEKIIPYPASSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSATSSRLSRTGPIWFSLVASENQGGDAPLPQIPASYVRIKDGSVPVSFIQKYIMKKLDLTSETEVEIKCMGQSVLPTLRLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKPPHP 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01810 519 SUPERFAMILY RING/U-box 103 173 - -
Phco2g01810 519 MobiDBLite consensus disorder prediction 341 361 - -
Phco2g01810 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 200 IPR013083 -
Phco2g01810 519 CDD RING-HC_PCGF 107 149 - -
Phco2g01810 519 SMART ring_2 109 149 IPR001841 -
Phco2g01810 519 MobiDBLite consensus disorder prediction 239 254 - -
Phco2g01810 519 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 91 515 IPR044807 GO:0004842
Phco2g01810 519 MobiDBLite consensus disorder prediction 202 295 - -
Phco2g01810 519 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Phco2g01810 519 MobiDBLite consensus disorder prediction 202 237 - -
Phco2g01810 519 MobiDBLite consensus disorder prediction 255 288 - -
Phco2g01810 519 MobiDBLite consensus disorder prediction 331 397 - -
Phco2g01810 519 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Phco2g01810 519 Pfam Zinc finger, C3HC4 type (RING finger) 109 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01810 Phco-Chr2 48605434 48611766 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01810 2 48605434 48611766 Phco2g01810 2 48605434 48611766 ECH
Phco2g01810 2 48605434 48611766 Phco6g01003 6 9847235 9851695 PCT