Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00995 ATGGAGAATTCATTGGGAAGCTATGAAAAAGAGCTTAATCTGGAGGCCACAGAGCTGCGATTGGGGTTGCCCGGTACCGATGAGCCTGAGAAACGTCCTATTGCCGCTAGAAGCAACAAAAGATCTTCACCAGAAGCAAGTGAAGAAGAGTGCATAAGCAATGTTTCTGATGTCACAAGTGATCACCAAGACAACGTTGTGCCACCTGCAAAGGCACAAGTTGTGGGATGGCCACCGATTCGATCTTACAGGAAGAACAGTCTACAGCAAAAGAAAGAAGAACAAAGTGAAGGGAATGGGATGTACGTGAAAGTTAGCATGGCGGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCTCAACTTCTCAAGGCCTTGGAAAATATGTTCAAGTGCATATTTGGAGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGACGTGCCATGGCACATGTTCGTGTCATCCTGCAAGAGGTTGAGAATTATGAAGGGATCAGAAGCAAAGGGGTTGTGTTGTTTTTGA 591 0.4484 MENSLGSYEKELNLEATELRLGLPGTDEPEKRPIAARSNKRSSPEASEEECISNVSDVTSDHQDNVVPPAKAQVVGWPPIRSYRKNSLQQKKEEQSEGNGMYVKVSMAGAPYLRKIDLKVYKSYPQLLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFVSSCKRLRIMKGSEAKGLCCF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00995 196 MobiDBLite consensus disorder prediction 24 47 - -
Phco6g00995 196 Pfam AUX/IAA family 42 194 IPR033389 -
Phco6g00995 196 MobiDBLite consensus disorder prediction 17 64 - -
Phco6g00995 196 ProSiteProfiles PB1 domain profile. 100 187 IPR000270 GO:0005515
Phco6g00995 196 MobiDBLite consensus disorder prediction 48 63 - -
Phco6g00995 196 Gene3D - 94 196 - -
Phco6g00995 196 SUPERFAMILY CAD & PB1 domains 95 186 - -
Phco6g00995 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 191 IPR003311 GO:0005634|GO:0006355
Phco6g00995 196 FunFam Auxin-responsive protein 95 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00995 Phco-Chr6 9794395 9795283 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco6g00995 AUX_IAA 1.7e-59 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01800 2 48530602 48531542 Phco6g00995 6 9794395 9795283 PCT