Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01800 ATGGAGAGCTATCAAACCGAGCTGAACCTTAAGGCCACAGAGTTGAGGTTGGGATTGCCTGGGAGTGATGAGCCTCAAGAGATACGTTCATGCAGTGGCTCTGTTGTTAGAAGCAGCAACAAGAGATCTTCACCAGAATCCAGTGTGGAAGAGTCCAGGTGCAAAACCAACATTAACTCTGACACTTCTGACTCCACAACCACAAGTGATCACGACCAAGACACTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTACAACAGAAGAAGGTGGAGCAGGGCGATGGAACTGGAATGTACGTAAAAGTCAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTAAAGGTTTACAAAAGCTACCCAGAACTCCTCGTGGCCTTGCAAAGTTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGATACAACGGATCTGAATACGCCCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTCGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGTTTGGGTTGTTTATGA 618 0.4579 MESYQTELNLKATELRLGLPGSDEPQEIRSCSGSVVRSSNKRSSPESSVEESRCKTNINSDTSDSTTTSDHDQDTVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYVKVSMAGAPYLRKIDLKVYKSYPELLVALQSLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01800 205 MobiDBLite consensus disorder prediction 27 43 - -
Phco2g01800 205 Pfam AUX/IAA family 13 203 IPR033389 -
Phco2g01800 205 ProSiteProfiles PB1 domain profile. 109 201 IPR000270 GO:0005515
Phco2g01800 205 Gene3D - 104 205 - -
Phco2g01800 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 200 IPR003311 GO:0005634|GO:0006355
Phco2g01800 205 MobiDBLite consensus disorder prediction 16 77 - -
Phco2g01800 205 MobiDBLite consensus disorder prediction 50 76 - -
Phco2g01800 205 FunFam Auxin-responsive protein 104 205 - -
Phco2g01800 205 SUPERFAMILY CAD & PB1 domains 105 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01800 Phco-Chr2 48530602 48531542 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco2g01800 AUX_IAA 2.8e-59 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01800 2 48530602 48531542 Phco2g01800 2 48530602 48531542 ECH
Phco2g01800 2 48530602 48531542 Phco6g00995 6 9794395 9795283 PCT