Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00937 ATGGTTGGCCCCTTCAGCTCCGACGATCGCAGGGTGGTTAGAATTGCCGTTGCAGGCGATGGTGGCACCGGAAAATCCACACTCGTAGCCGCAATGGCGTCGGAATCTTTCCCCAAGTCCGTCCCGCCCGTGTTCCCTCCCACTCGCTTGCCCCATAATCTGTACCCCGATTCCGTTCCTCTCACCCTCGTTGACACACCTTCCAGCTTCGAAAAACAAGACGCGCGCAATGAAGAATTGAAGCGAGCTGACGCTGTGGTCTTAACCTATGCCTGCGATGAACCGTTGAGCTTTGAGCGTTTGAGTGCTTACTGGCTCCCAGAACTGCAGAAGTTGGAGGTGAAGGCACCTGTGATTTTGGTTGGCTGCAAGCTTGACCTGCGGAATGAAAATCAGCTAGTGAGCTTAGAGAGTCTCACCACAAATATCATGCAACAGTTCACTGAAATTGTCACTTGTGTCGAATGCTCAGCTGCTACACTTTATCAGGTCCCTGAAGTTTTTTATTTTGCCCTAAAAGCAGTACTGCATCCAGTAGATCCATTGTTTGATTATAAAAGACATGGTTTAACAGATCGATGTGTGAGGGCGTTAAGAAGAATATTTATTCTATGCGATCATGACATGGATGGAGCTCTCAATGATGAAGAACTAAATGAGTTTCAGGTTAAATGCTTCAATGCAGCATTGCAGCCATCTGAAATAGTAAAAGTCAAAACAATTGTACAGCAGAAAGTACCTGATGGAGTCAACTCTATTGGTCTTACCTTTCCAGGCTTTATTTATGTCCATAACATGTTTCTAAAGAAAGGACGAACAGAGACATTGTGGGCTGTTCTAAGAAAGTTTGGATATGATAATGATTTAAAACTTCGGGATGACTTTATTCCAGTTCCGTCTATGCATGCTTCTGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTTTGAATGGAATCTTTCAATTGTTAGATACAGATAAAGATCTAACCCTACAACCTGCTGAAGTTGATAAACTATTTGATACTGCACCAGAAAGTCCATGGAACAATGCTCCATATAAGGATGCTGCAGAGAAAACTGATATGGGCTATATCTCTCTAAATGGATTTCTGTCTCAGTGGGCCCTCATGACATTACTCGATCCAAAACTTAGCTTGGCTAATTTGATTTACATTGGATACAAGGGTAATCCTGCAGCAGCATTCCGTGTCAGTCGTAAAAGATCATTAGATCGCAAGAAGCAAATGACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAACATGCTGGGAAATCTGCTTTGCTGTACTCATTACTGGGAAGGCCTTTCTCAAATAATTATACTCCAACAACAGTTGAGCAGTATGCGACAAATGTCATTGAACTAAAAGGGGTAACTCGGAAAATTCTCATATTGCGTGAGATACCTGAGGATAGATTACCGGAATTTTTGTCAAATCAGGATTGTTTGGCTGCGTGCGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAAACCAGAGATTTGCTTGAGAAGGTTGTTAGACATGGAGAACTAACTGGTTATAGAACCCCTTGCCTTGTCATCGCTGCTAAGGATGATTTATCTCCATTGCCAAGGGCAGTACTAGATTCATTTAAGGTTACCCAGGAATTGGGAATAAAGGCACCTGTTCACGTCAGTATGAAACTAGGTGATTCGAGTAATGTGTATAATAAAATTGTTAATGCAGCAGAACACCCTCATTTAAGCATTCCAGAAACTGAGATTTCACGAAGAAAGAAGCATCAACACCAGCTTCATCGCTCTCTTATTTTTGCCTTGGTTGGAGCTGCTATGGCGGTTGCCGGTTTGACAGCTTGTCGCGTGCGTGTAGCGAAGAAGAATGCTAGTACTGCTTAG 1932 0.4286 MVGPFSSDDRRVVRIAVAGDGGTGKSTLVAAMASESFPKSVPPVFPPTRLPHNLYPDSVPLTLVDTPSSFEKQDARNEELKRADAVVLTYACDEPLSFERLSAYWLPELQKLEVKAPVILVGCKLDLRNENQLVSLESLTTNIMQQFTEIVTCVECSAATLYQVPEVFYFALKAVLHPVDPLFDYKRHGLTDRCVRALRRIFILCDHDMDGALNDEELNEFQVKCFNAALQPSEIVKVKTIVQQKVPDGVNSIGLTFPGFIYVHNMFLKKGRTETLWAVLRKFGYDNDLKLRDDFIPVPSMHASDQSVELTGEAVEFLNGIFQLLDTDKDLTLQPAEVDKLFDTAPESPWNNAPYKDAAEKTDMGYISLNGFLSQWALMTLLDPKLSLANLIYIGYKGNPAAAFRVSRKRSLDRKKQMTERNVFQCYVFGSKHAGKSALLYSLLGRPFSNNYTPTTVEQYATNVIELKGVTRKILILREIPEDRLPEFLSNQDCLAACDVAVFVYDSSDEYSWKKTRDLLEKVVRHGELTGYRTPCLVIAAKDDLSPLPRAVLDSFKVTQELGIKAPVHVSMKLGDSSNVYNKIVNAAEHPHLSIPETEISRRKKHQHQLHRSLIFALVGAAMAVAGLTACRVRVAKKNASTA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00937 643 Gene3D - 9 180 IPR027417 -
Phco6g00937 643 FunFam Mitochondrial Rho GTPase 10 180 - -
Phco6g00937 643 FunFam Mitochondrial Rho GTPase 291 481 - -
Phco6g00937 643 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Phco6g00937 643 Gene3D - 291 481 - -
Phco6g00937 643 FunFam Mitochondrial Rho GTPase 488 589 - -
Phco6g00937 643 SMART ras_sub_4 10 178 - -
Phco6g00937 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Phco6g00937 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
Phco6g00937 643 SUPERFAMILY EF-hand 181 380 IPR011992 -
Phco6g00937 643 Pfam Ras family 428 547 IPR001806 GO:0003924|GO:0005525
Phco6g00937 643 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Phco6g00937 643 SMART rab_sub_5 13 178 - -
Phco6g00937 643 FunFam Mitochondrial Rho GTPase 185 289 - -
Phco6g00937 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Phco6g00937 643 PIRSF Miro 9 642 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Phco6g00937 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Phco6g00937 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Phco6g00937 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Phco6g00937 643 PANTHER RHO FAMILY GTPASE 425 550 IPR003578 GO:0005525|GO:0007264
Phco6g00937 643 Gene3D - 487 588 IPR027417 -
Phco6g00937 643 CDD Miro2 420 599 - -
Phco6g00937 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 210 IPR027417 -
Phco6g00937 643 Pfam EF hand associated 350 417 IPR013566 -
Phco6g00937 643 Pfam EF hand associated 229 312 IPR013567 -
Phco6g00937 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Phco6g00937 643 Gene3D - 185 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00937 Phco-Chr6 9090351 9106360 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01735 2 47657172 47665593 Phco6g00937 6 9090351 9106360 PCT