Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00884 ATGACCGGAGTGGTCATGGTTACCAAGGGCGGTAGATGCGGAGGCGGTGGGAAGCGGTCGAGGGCGGCGCGAACCGCCGAGGAAGAAGAAGAGCAGCAGAACCAGCTCTCCCTCGTGGCGTTTCTCTTGGCGGCCATCAGAAAATCGATGGTTTCGTGCAGGGTGGACCCACCCGACGATGTAATCTCCAGCGTCCATCACATGGAGATCGGATGGCCTACTAACGTTCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGTTTCCTTGGTCTTCCTTACGAATTCCAAGTTGAGATCCCTGCTAGGGTACCCAGTGCTAGTGTAAGTGTGTTTGGCGTCTCGGCAGAATCTATGCAGTGTTCTTATGATTCTAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGGCTATACTCACAGAGAGGCTTAAAGGCTGAGGGTATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGAGGCATTGTGCCTGATGACATTGATGTGCACTGCTTGGCCGGACTAATTAAAGCCTGGTTTCGAGAGCTACCTTCAGGAGTGCTAGACGGACTTTCCCCTGAGCAAGTTCTTCAATGCAACACAGAAGAAGAGTCTGTTGAGCTTGTGAAGCAGCTAAAGCCAACTGAATCTGCCTTACTCAGCTGGGCCATTGATCTCATGGCCGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACTGCCCTGATGCATGCGGTTCAAGTTATGAACTTACTCAAGACACTTATCATGAAGACACTTCGAGACCGTGAAGAATCAGCAACAGGCGGGTATTCTCCCATGTCTTTTCATTCATCGGGTCACCACTCAGAGGATGAATATGACAGTCAGCGAGAAATGGAAACTAGCGGTGAATTGAGAGGTGCCAAATCAGATTATGATGCTCACTATGGCCAGAGCAGTGAAGGGGAGGCTGAATCTTTATGCGAGATAGAGGAGTGCTTCTTGAAGCAGTTGGATGAGAACACAAAGGGATTCTCACAAGAACCTGCAGGTCATTTGGAAAAGTATGTTAGTACCATAAGTTACTCTGCCTATAGCATGGAACCTTCTATTTCTGTTACTGACAACAAAGCTGGGAATTCCTGCTTTAGGACAACACTGACAGGTTTGGCCTCAAGTGTTAACACAAGTAGTTCATCAATTGGATGTACAAGCACCAAAGATGTGGAGATGGTGGATAAATTTGCTGATTCTATTTCACCTGTGCCACTCCTTGCTTCTAGCTAA 1365 0.4718 MTGVVMVTKGGRCGGGGKRSRAARTAEEEEEQQNQLSLVAFLLAAIRKSMVSCRVDPPDDVISSVHHMEIGWPTNVQHITHVTFDRFNGFLGLPYEFQVEIPARVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQRGLKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVELVKQLKPTESALLSWAIDLMADVVEEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLRDREESATGGYSPMSFHSSGHHSEDEYDSQREMETSGELRGAKSDYDAHYGQSSEGEAESLCEIEECFLKQLDENTKGFSQEPAGHLEKYVSTISYSAYSMEPSISVTDNKAGNSCFRTTLTGLASSVNTSSSSIGCTSTKDVEMVDKFADSISPVPLLASS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00884 454 SUPERFAMILY GTPase activation domain, GAP 111 289 IPR008936 -
Phco6g00884 454 Gene3D Rho GTPase activation protein 102 297 IPR008936 -
Phco6g00884 454 Pfam P21-Rho-binding domain 69 100 IPR000095 -
Phco6g00884 454 MobiDBLite consensus disorder prediction 311 329 - -
Phco6g00884 454 MobiDBLite consensus disorder prediction 296 329 - -
Phco6g00884 454 CDD RhoGAP 132 288 - -
Phco6g00884 454 SMART RhoGAP_3 129 292 IPR000198 GO:0007165
Phco6g00884 454 FunFam Rho GTPase-activating protein 5 100 293 - -
Phco6g00884 454 ProSiteProfiles CRIB domain profile. 70 83 IPR000095 -
Phco6g00884 454 PANTHER MKIAA1688 PROTEIN 22 361 IPR044785 GO:0005096
Phco6g00884 454 SMART PBD_5 70 104 IPR000095 -
Phco6g00884 454 Gene3D CRIB domain 64 101 IPR036936 -
Phco6g00884 454 ProSiteProfiles Rho GTPase-activating proteins domain profile. 115 296 IPR000198 GO:0007165
Phco6g00884 454 Pfam RhoGAP domain 132 266 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00884 Phco-Chr6 8615925 8618741 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00884 6 8615925 8618741 Phco6g00884 6 8615925 8618741 ECH
Phco2g02313 2 53643135 53645720 Phco6g00884 6 8615925 8618741 PCT