Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00873 ATGAAGCCATGCAACGGGAATCATGAGATTCCCTTCCACATCCATTACGGTAGGCATGATAACACCTCATCAAATCACCAGGACTCGCGTCTCGTCTCAATGGATAAGATCATCATCAAACGCCGCCCATCCAACGACTCCAACTCACTCATATCCACTTACTTTCTAACCTCTACCGGTACAACACAAACTCCTTATCCTCCTCACCCTCACCTTCACTCTCTATTTCTCTCTCTCTTCTCTCTTTGTCCCTGCCAACTACAACAACTCCACAACACAACCTCGCTATTCCAATGGCGTCTCAGATCTAGACGCTACTCTGCTCCTAATATTCCTATTCAAAATATTGTTATTGTTGTTCATCTTTGCTTCCAGAACTATAGCGTTTTGGGTTATATTCCGTTGGACATGCGGCCCAGAGTAGCCTACTCCTTCCCTGAGGAGGTGCTGGAGCATGTGTTCTCCTTCATCGAGTGCGACAAGGACCGTGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTACGAGATCGAGCGCTGGTGCCGCCGGAGAGTCTTCATCGGTAACTGCTATGCTGTCTCTCCGGCCGCCGTCGCCAACCGCTTCCCCAAAGTGAGATCCATTACTATCAAGGGCAAGCCGCACTTCGCAGACTTCAATTTGGTTCCCGAGGGCTGGGGTGCTTACGTCGGCCCTTGGATCAAGGCCATGGCTGCTGCCTACCCATGGCTCCAGGAGATCAGGCTCAAGAGGATGGTCGTCACCGATGAATGCTTGGAGCTTATCGCGAAATCGTTCAAGAACTTCGGAGTGCTGGTGCTCACCTCTTGCGAGGGTTTCACCACTGATGGACTTGCTGCCATTGCCGCCCATTGCAGGAATTTGAGGGAGTTGGAGTTACGGGAGAGTGAAGTCGATGACATTTGTGGGCACTGGCTTAGCCATTTTCCCGATTCGTACACATCCTTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGTCTGGTTAGTAGGTGTCCCAATCTGCAGACTCTCCGCCTCAATCGTGCTGTGCCCCTGGACAGGCTGGCCAACCTTCTTCGTGGAGCTCCTCAGTTGGTTGAGTTAGGCACAGGAGCCTACACGACTGAGATGCGGCCGGATGTCTTTTCGAACCTGGCCGAAGCATTTTCTGGGTGCCGTCAATTGAAAAGCCTGTCTGGATTTTGGGACGTGCTCCCCTCCTACCTTCCTGCTGTTTATCCTATCTGCTCCAACCTGACATCGCTAAACATGAGTTATGCAACTATTCAAAGCCCTGATCTTACCAAGCTTGTTAGTCAGTGTGAAAATTTACAACGGTTATGGGTGTTGGATTACATAGAAGATGCTGGCCTTGAAGTGATTGCTGCGTCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCGTCTGACCCTTTTGGGTTAGATCCAAATGTAGCATTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGCTGCTCCAAGCTCCAGTCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCCTTGCTTACAATTGCCAGGAACAGGCCTAATATGACTCGTTTTAGACTGTGTATTATTGAGCCTCAAGTTCCAGACTATCTTACCCATGATCCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCGTCGCCTTTCCCTTTCTGGGCTTCTTACTGACCGCGTTTTTGAGTATATTGGGACTTACGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGCGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTAGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTACGGAGCATGTAAACTGCTGGGTCAGAAAATGCCGATGCTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCGAGGCCGGATAGTAGTCCTGTTGAGAAGCTATACATATACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGGAAGATGATTCTGCATTAAGAATTTCTTGA 2166 0.4908 MKPCNGNHEIPFHIHYGRHDNTSSNHQDSRLVSMDKIIIKRRPSNDSNSLISTYFLTSTGTTQTPYPPHPHLHSLFLSLFSLCPCQLQQLHNTTSLFQWRLRSRRYSAPNIPIQNIVIVVHLCFQNYSVLGYIPLDMRPRVAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFIGNCYAVSPAAVANRFPKVRSITIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVVTDECLELIAKSFKNFGVLVLTSCEGFTTDGLAAIAAHCRNLRELELRESEVDDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRGAPQLVELGTGAYTTEMRPDVFSNLAEAFSGCRQLKSLSGFWDVLPSYLPAVYPICSNLTSLNMSYATIQSPDLTKLVSQCENLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLDPNVALTEQGLVSVSEGCSKLQSVLYFCRQMSNAALLTIARNRPNMTRFRLCIIEPQVPDYLTHDPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPMLNVEVIDERGPPDSRPDSSPVEKLYIYRTVSGPRLDMPGYVWRMEDDSALRIS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00873 721 Gene3D Ribonuclease Inhibitor 182 712 IPR032675 -
Phco6g00873 721 Pfam Transport inhibitor response 1 protein domain 202 248 IPR041101 -
Phco6g00873 721 CDD F-box_AtTIR1-like 144 181 - -
Phco6g00873 721 SUPERFAMILY RNI-like 170 670 - -
Phco6g00873 721 FunFam Transport inhibitor response 1 141 181 - -
Phco6g00873 721 Pfam F-box 143 183 IPR041567 -
Phco6g00873 721 Gene3D - 137 181 - -
Phco6g00873 721 SMART fbox_2 145 186 IPR001810 GO:0005515
Phco6g00873 721 SUPERFAMILY F-box domain 143 179 IPR036047 GO:0005515
Phco6g00873 721 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 224 672 - -
Phco6g00873 721 FunFam Transport inhibitor response 1 182 712 - -
Phco6g00873 721 SMART LRR_CC_2 567 590 IPR006553 -
Phco6g00873 721 SMART LRR_CC_2 507 531 IPR006553 -
Phco6g00873 721 SMART LRR_CC_2 616 640 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00873 Phco-Chr6 8508405 8511114 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00873 6 8508405 8511114 Phco6g00873 6 8508405 8511114 ECH
Phco2g02327 2 53740198 53743347 Phco6g00873 6 8508405 8511114 PCT