Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02327 ATGGCCTACACGTTCTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATTGAGAGCGAGAGGGACCGGAACGCGATCTCGTTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAAGGTTTTTGTGGGTAACTGCTACGCGGTGAGCCCAGTGATGGTGATCAAGCGGTTCCCGGAACTGAGATCCATTGCGCTCAAGGGGAAGCCGCACTTCGCGGACTTCAATTTGGTTCCCGAGGGTTGGGGCGGTTACGTCTGTCCCTGGATCGCCGCCATGGCATGCGCCTTCCCCTGCCTCGAAGAGATCAGACTCAAGAGGATGGTCATCACTGACGAGAGCTTGGAACTCATCGCCAAGTCCTTCAAAAACTTCAAGGTGCTGGTTCTCACTTCTTGCGAGGGTTTCACCACTGACGGACTGGCCGCCATTGCTGCCAACTGCAGGAATTTGAAGGAGTTGGACTTGCAGGAGAGTGAAGTGGATGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTTCACGTCACTAGTTTCACTTAACATCTCTTGTTTAGGCAATGAGGTGACTTTATCTGCACTAGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCAGACCCTGCGCCTCAATCGTGCTGTGCCCCTGGATAGACTACCCAATCTACTTCGTCGTTGTCCTCAGCTGGTTGAGTTAGGCACTGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCTGCATTTTCTGGGTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGACGTGCTCCCATCCTACCTTCCAGCTGTCTACCCTGTCTGCTCCAGGCTAACATCACTAAACTTGAGTTATGCTATTATTCAGAGCCCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGGTTATGGGTTCTGGATTACATCGAAGATGCTGGTCTTTATAACCTTGCTGCATCATGCAAGGATCTAAGGGAGTTAAGGGTGTTTCCGTCTGACCCATTCGGTTTAGAACCAAATGTTGCATTGACGGAAAAGGGCCTTGTCTCCGTGTCTGAAGGTTGTCCCCGGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCCCTGCATACCATTGCGCTGAACAGGCCTAATTTGACTCGTTTTCGGCTTTGTATTATTGAGCCTAGAACGCCTGACTATCTTACCCATGAACCACTTGATTCTGGTTTTGGAGCTATTGTAGAACATTGCAAGGATCTGCAACGCCTATCCCTATCTGGTCTTCTTACTGATCGTGTTTTCGAGTATATTGGGACTTACGGGAAGAAGCTGGAGATGCTATCCGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCATGTGCTGTCTGGGTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCGCTTTTGGCAAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCAGTGAGTTATGGAGCATGTAAGGTACTGGGCCAGAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGATAATTGTCCTGTTGAGAAGCTTTATATTTACAGGACTATTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACGATGGAAGATGATTCTTCACTAGGCTTGAGTGATCATGCTGTGGATTGA 1767 0.4975 MAYTFSFPEEVLEHVFSFIESERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPVMVIKRFPELRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMACAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLKELDLQESEVDDLSGHWLSHFPDSFTSLVSLNISCLGNEVTLSALERLLGRCPNLQTLRLNRAVPLDRLPNLLRRCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSRLTSLNLSYAIIQSPDLIKLISQCPNLLRLWVLDYIEDAGLYNLAASCKDLRELRVFPSDPFGLEPNVALTEKGLVSVSEGCPRLQSVLYFCRQMSNAALHTIALNRPNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKVLGQKMPRLNVEVIDERGPPDSRPDNCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLGLSDHAVD 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02327 588 SMART LRR_CC_2 127 152 IPR006553 -
Phco2g02327 588 SMART LRR_CC_2 429 452 IPR006553 -
Phco2g02327 588 SMART LRR_CC_2 478 502 IPR006553 -
Phco2g02327 588 SMART LRR_CC_2 369 393 IPR006553 -
Phco2g02327 588 SMART LRR_CC_2 102 126 IPR006553 -
Phco2g02327 588 SMART LRR_CC_2 311 334 IPR006553 -
Phco2g02327 588 SMART LRR_CC_2 181 207 IPR006553 -
Phco2g02327 588 FunFam Transport inhibitor response 1 44 574 - -
Phco2g02327 588 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 86 535 - -
Phco2g02327 588 Pfam Transport inhibitor response 1 protein domain 64 110 IPR041101 -
Phco2g02327 588 SUPERFAMILY F-box domain 6 39 IPR036047 GO:0005515
Phco2g02327 588 Gene3D - 3 43 - -
Phco2g02327 588 CDD F-box_AtTIR1-like 6 43 - -
Phco2g02327 588 SMART fbox_2 7 48 IPR001810 GO:0005515
Phco2g02327 588 Pfam F-box 5 45 IPR041567 -
Phco2g02327 588 Gene3D Ribonuclease Inhibitor 44 574 IPR032675 -
Phco2g02327 588 FunFam Transport inhibitor response 1 3 43 - -
Phco2g02327 588 SUPERFAMILY RNI-like 30 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02327 Phco-Chr2 53740198 53743347 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02327 2 53740198 53743347 Phco2g02327 2 53740198 53743347 ECH
Phco2g02327 2 53740198 53743347 Phco6g00873 6 8508405 8511114 PCT