Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00843 ATGGGAAGGAAGGGAAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAATCAAAGGAGAGGAACGATCAGAAAACAAGTAGATCAAAGAAGAAATGGTTTGGAAAGCAAAAATTGCATTCAGCATCACAATCCGAAACTGATAAAGCACCTCCTCTTCCTCCACCTGAAGTTATTTTACCTCAGGCTGAGATTGAAACTAGTCATGATCGCATCAGAGTTGAAACTGCAGTGGTTGCTGAGGAACCAGTTCCTGCTGTTCAGACAGCACCTGCGGAGGTTCAAGCCACTACAATTGTTCAGTTACACAGTATACCAACAGAAGAAGTGGCAGCAATAAGGATTCAGAAAGCTTTTCGGGGATACTTGGCAAGAAGGGCATTGCGTGCTTTAAGGGGACTGGTGAGGTTGAGATCCCTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACCCTCCGTTCTATGCAGACTTTTGCACATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTGGAGGAGAATCAAGCTCTACAGAAACAGCTCTTACAGAAACATGCAAAAGAGCTAGAGAGCACCAGGCTTGGGGAGGATTGGGATGACAGCGTACAATCAAAAGAACAGGTTGAAGCCAAGCTACTCGGCAAGTATGAAGCTTCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCAAAACTGGAAGAATTCATCAAGATCCATAAACCCTATGTTCATGGATCCAACCAATCCGACCTGGGGTTGGAGTTGGTTGGAACGATGGACGGCAGCCCGGCCCTGGGAGAGCCATAGCCTGATGGAGAAAGAGAAGAATGACAATAAATCTATTAGAAGTTCTGGCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTAAATTTCAGCTCAATTCTGAGAAACATTCTCCCACAGCCAGCCAAAATCCAGGCTCACCTAACTTTGAGTCACATTCCCAGAAGTCCCATTCAAATCCTCCCAAGTCAGCTTCTCCAGCAGCTGCCAAGAAGCTGAAGAAAGTGAGTCCAAAGGACATGTTGGCTATAGAAGATGACACCAAAAGTCTGGTGAGTGTGCAGTCAGAGAGGCCAAGGAGGCACTCCATTGCTGGATCAACAGTGGAAGATAATGAAAGCCTTGCAAGCTCCCCAGCTATTCCAAGTTACATGGTGCCAACTAAATCTGCCAAAGCTAAGTCCAGAATGCAAAGTCCACTGGCTGCAGAAAATGTTACCCCAGATAAAGGGTCCTCTGCTGGGACTGCAAAGAAACGTCTTAGTTTCCCTGCTTCACCTGCTAGACCAAGAAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCTGAAATCACCGTGGGAAATGGTGTGGCTGGTTGA 1425 0.4625 MGRKGSWFSTVKKALSPESKERNDQKTSRSKKKWFGKQKLHSASQSETDKAPPLPPPEVILPQAEIETSHDRIRVETAVVAEEPVPAVQTAPAEVQATTIVQLHSIPTEEVAAIRIQKAFRGYLARRALRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRSRRLRMLEENQALQKQLLQKHAKELESTRLGEDWDDSVQSKEQVEAKLLGKYEASMRRERAMAYSFSHQQNWKNSSRSINPMFMDPTNPTWGWSWLERWTAARPWESHSLMEKEKNDNKSIRSSGRGITSAEISKSFAKFQLNSEKHSPTASQNPGSPNFESHSQKSHSNPPKSASPAAAKKLKKVSPKDMLAIEDDTKSLVSVQSERPRRHSIAGSTVEDNESLASSPAIPSYMVPTKSAKAKSRMQSPLAAENVTPDKGSSAGTAKKRLSFPASPARPRRHSGPPKVESSFNAEITVGNGVAG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00843 474 Gene3D iswi atpase 108 143 - -
Phco6g00843 474 MobiDBLite consensus disorder prediction 311 474 - -
Phco6g00843 474 SMART iq_5 108 130 IPR000048 GO:0005515
Phco6g00843 474 MobiDBLite consensus disorder prediction 387 403 - -
Phco6g00843 474 MobiDBLite consensus disorder prediction 15 31 - -
Phco6g00843 474 MobiDBLite consensus disorder prediction 352 375 - -
Phco6g00843 474 MobiDBLite consensus disorder prediction 411 431 - -
Phco6g00843 474 MobiDBLite consensus disorder prediction 1 59 - -
Phco6g00843 474 PANTHER IQ-DOMAIN 5-RELATED 1 455 - -
Phco6g00843 474 MobiDBLite consensus disorder prediction 311 343 - -
Phco6g00843 474 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
Phco6g00843 474 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00843 Phco-Chr6 8276790 8279021 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00843 6 8276790 8279021 Phco6g00843 6 8276790 8279021 ECH
Phco2g02006 2 50759505 50762637 Phco6g00843 6 8276790 8279021 PCT