Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00830 ATGGCCGCAGCTGCCCGCCCCCTCGTCACCGTCCAGTCCCTCGAGGGTGACATGGCAACCGACGCCGCCGCCACCGTCCCCATTCCCGACGTCATGAAGACTTCCATCCGCCCCGACATCGTCAACTTCGTCCACTCCAACATTTCCAAGAACAGCCGTCAGCCCTACGCCGTCAGCCGCCGCGCCGGACACCAGACATCCGCCGAGTCCTGGGGAACAGGTCGCGCAGTCTCTCGTATCCCTCGTGTGCCCGGTGGAGGAACCCACCGTGCCGGCCAGGGAGCCTTCGGCAACATGTGCCGTGGTGGTCGCATGTTTGCCCCGACTAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGTTACGCTGTCGTCTCTGCCATCGCCGCCTCTGCCATCCCCTCCCTCGTCCTTGCTCGTGGCCACCGCATCGAGACCGTCCCCGAACTCCCCCTTGTTGTCAGTGACTCTGCTGAAGGGGTCGAGAAAACAAAGGAAGCAATCAAAGTCCTGAAACAGATCGGTGCTTTCGCTGACGCTGAGAAAGCAAAAGACAGCCGCGGCATTCGCCCTGGTAAGGGAAAAATGCGCAACCGCCGCTACATCTCTCGAAGGGGTCCACTCATCGTGTACGGAACAGAAGGAGCTAAAGCTGTTAAGGCTTTCCGTAACGTCCCTGGTGTTGAGGTCGCCAATGTTGAGAGACTCAACCTTCTTAAGCTCGCTCCCGGTGGTCACCTTGGGCGGTTTGTGATTTGGACCAAGTCTGCTTTTGAGAAATTGGACTCCATTTATGGCTCGTTTGACAAGCCCAGTGAGAAGAAGAAGGGTTACTTGCTTCCCAGGTCTAAGATGGTGAACTCGGACATCTCCAGGATTATTAATTCTGATGAGGTTCAGTCCGTCGTCAGGCCCACTAAGAAGGATGTGACTCGGGCTACGCTCAAGAAGAACCCTCTAAAGAATCTCAATGTCATGCTCAAGCTAAATCCCTATGCCAAGACTGCCAAGAGGATGGCTTTGCTTGCTGAGGCCCAACGTGTTAAGGCCAAGAAGGAGAAGCTCGATAAGAAGAGGAAGACTGTATCTAAGGAGGAGGCTTCTACCATCAGAGCTGCAGGAAAGGCATGGTATCACACTATGGTCTCAGATTCTGATTATACAGAATTTGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTAA 1218 0.5493 MAAAARPLVTVQSLEGDMATDAAATVPIPDVMKTSIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFADAEKAKDSRGIRPGKGKMRNRRYISRRGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDISRIINSDEVQSVVRPTKKDVTRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKEEASTIRAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00830 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Phco6g00830 405 Coils Coil 342 369 - -
Phco6g00830 405 MobiDBLite consensus disorder prediction 54 94 - -
Phco6g00830 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Phco6g00830 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Phco6g00830 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Phco6g00830 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Phco6g00830 405 FunFam 60S ribosomal protein L4 3 308 - -
Phco6g00830 405 MobiDBLite consensus disorder prediction 54 73 - -
Phco6g00830 405 SUPERFAMILY Ribosomal protein L4 10 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00830 Phco-Chr6 8181592 8183707 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00830 6 8181592 8183707 Phco6g00830 6 8181592 8183707 ECH
Phco2g01996 2 50644712 50646201 Phco6g00830 6 8181592 8183707 PCT