Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01996 ATGGCAGCAGCAGCAGCAAGGCCTCTCGTATCCGTTCAAACCCTAGAGGGCGATGCAGCCCCCACCGTCCCTCTTCCTGATGTCATGAAGGCTCCCATTCGCCCTGACATTGTCAATTTCGTCCACTCCAACATTTCTCGCAACAGCCGCCAGCCCTACGCTGTCAGCAAGCGCGCCGGCCACCAGACATCTGCTGAGTCCTGGGGAACCGGCCGCGCCGTATCGCGTATCCCTCGTGTCCCCGGCGGCGGAACGCACCGCGCTGGTCAGGCTGCCTTTGGCAACATGTGCCGCGGCGGCCGTATGTTCGCGCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACATTCAGCAGAAACGCCACGCCGTGGTCTCCGCCATCGCCGCCTCCGCGATACCCTCCTTGGTCCAGGCCCGCGGCCACAGCATCGAGTCTGTCCCTGAGCTCCCTCTCGTTGTTAGCGACAGCATCGAGAGCGTGGAGAAGTCCAAAGAAGCGGTGAAAATTCTTCAGAAGATCGGCGCGTTCCCCGACGCGGAGAAAGCGAAACTGAGCCGCGGAATTCGTCCCGGTAAGGGGAAAATGAGGAACCGTAGGTACATTTCTCGCAGGGGTCCTCTTATCGTGTACGGATCTGAAGGGGCTAAAGCGGTTAAAGCGTTCAGGAACATTCCCGGTGTTGAGGTGGCAAATGTCGACAGGCTTAACCTTCTGAAGCTTGCACCCGGTGGCCATCTTGGGAGGTTTATTATATGGACCAAGTCCGCGTTTGAGAAACTGGACTCCATTTATGGGTCTTTCGACAAGGCCTCCGAGAAGAAAAAGGGCTACCTGCTTCCCCGGGCCAAGATGGTTAACTCGGACTTGGCCCGTATCATTAATTCCGATGAGGTCCAGTCCGTGGTGAGGCCCGTTAATAAGGAGGTTAAACGCGCTACTCTGAAGAAGAACCCTCTTAAGAACCTCAATGTCATGTTGAAGCTGAATCCCTATGCTAAGACCGCTAAAAGGATGGCTCTTCTCGCTGAGAAGCAGCGCCTTGTGGCTAAGAAGGAAAAGCTTGATAAGAAGCGCAACACTGTTTCCAAGGAGGAGGCTTCTACTATCAGAGCTGCTGGAAAAGCGTGGTATCAAACTATGGTGTCAGACTCTGATTATACAGAGTTTGATAACTTCTCTAAGTGGCTGGGTGTTTCCCAGTAG 1209 0.5533 MAAAAARPLVSVQTLEGDAAPTVPLPDVMKAPIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINIQQKRHAVVSAIAASAIPSLVQARGHSIESVPELPLVVSDSIESVEKSKEAVKILQKIGAFPDAEKAKLSRGIRPGKGKMRNRRYISRRGPLIVYGSEGAKAVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKASEKKKGYLLPRAKMVNSDLARIINSDEVQSVVRPVNKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRLVAKKEKLDKKRNTVSKEEASTIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01996 402 MobiDBLite consensus disorder prediction 52 70 - -
Phco2g01996 402 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
Phco2g01996 402 FunFam 60S ribosomal protein L4 4 305 - -
Phco2g01996 402 Coils Coil 339 366 - -
Phco2g01996 402 PANTHER 60S RIBOSOMAL PROTEIN L4 5 395 IPR045240 -
Phco2g01996 402 Gene3D - 4 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Phco2g01996 402 Pfam 60S ribosomal protein L4 C-terminal domain 277 348 IPR025755 -
Phco2g01996 402 MobiDBLite consensus disorder prediction 52 88 - -
Phco2g01996 402 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
Phco2g01996 402 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01996 Phco-Chr2 50644712 50646201 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01996 2 50644712 50646201 Phco2g01996 2 50644712 50646201 ECH
Phco2g01996 2 50644712 50646201 Phco6g00830 6 8181592 8183707 PCT