Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00771 ATGGCGGCGGCGTCACGGCGGCTCCGGGACCTCCAATCTCAGGCGGCGAACAAGATCTGCGTTGACTGCTCCCAGAAGAACCCGCAGTGGGCATCCGTCTCGTACGGCGTCTTCATGTGTCTGGAGTGCTCCGGCAAGCACCGGGGCTTGGGCGTCCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCCGGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTACTCCATCCCTAAGGAGACAGACATCGTCACTAAATACAACACCAACGCCGCCGCCATATACCGCGACCGGATCCAGGCCGTCGCCGACGGCCGTCCCTGGCGAGATCCGCCAGTAGTGAAGGAAAACCTCGCAGCTGGCAAGGGGAAACCGTCGCTGACGCAGACGCGAAGAGCTAGCGAGGGAGGATGGGACGATTGGGACAACGAGGGGAGTTCGGCGGACATTCGGAGCAGGTCAACCGGGGACTTCAGTAGCTTGAACGGCGCGGGTGCACCGGCGAGGTCGAGGTCGACGGAGGACATCACGCGGTCGCAGCTGGAGGCGTCGGCGGCGAACAAGGAAAGCTTCTTCGCGAGGAAGATGGCGGAGAACGAGTCGCGGCCTGAGGGGCTTCCGCCGTCGCAGGGTGGGAAGTTCGTAGGGTTCGGGTCCAGTCCGCCGCCTCAGCGAAGGAACGATGCTCAAAACGATTATTTATCTGTCGTTTCGCAGGGGATTGGGAAATTGTCTTTGGTTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCTGGCACGAAGGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCACAAGGTCAATGAAACTGTCACTGTTGTCACTCAAAAGACGTCAGAGATAGGACAGAGGACTTGGGGCATAATGAAAGGAGTTATGGCCATGGCCTCCCAGAAGATCGAGGAGTACACTAGAGATGATCCGAACTGGAAGACTGATAACTGGCAACGAAATGACAGTGATAGAAATGGTTATTATCAGGATTTTAACCAACAGAACAAAGGCTTGAATTCTTCTCCTGGAAGAGAACAATCTTCATCAGGGCAATATAAAACTCATAGCTCAAGCTCTTTGGATGATTGGGACCACCGAGATAGCAGGAAGGAAATACCAGTTAAAGGATCAACTCCCTATTCATCAGGTGGACAGTCTAGTACCTACAACTCAAGCTCTTGGGATGATTGGGAACACACAGATTCTAGGAAGCAAGAACCAGCTAAAGCAGCAGCTCCCCGTAATAATGATGATTGGGCTGGCTGGGACAATGCCAAAGATGATGGATTTGATAATTTTTACCAAGATGCGTCTAATAAGAAAGGTGTTGGCCATAATGGTAAATCGGATGGCACTTGGACAGAGGGCGGCTTTCTCTAA 1449 0.5349 MAAASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAIYRDRIQAVADGRPWRDPPVVKENLAAGKGKPSLTQTRRASEGGWDDWDNEGSSADIRSRSTGDFSSLNGAGAPARSRSTEDITRSQLEASAANKESFFARKMAENESRPEGLPPSQGGKFVGFGSSPPPQRRNDAQNDYLSVVSQGIGKLSLVAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTRDDPNWKTDNWQRNDSDRNGYYQDFNQQNKGLNSSPGREQSSSGQYKTHSSSSLDDWDHRDSRKEIPVKGSTPYSSGGQSSTYNSSSWDDWEHTDSRKQEPAKAAAPRNNDDWAGWDNAKDDGFDNFYQDASNKKGVGHNGKSDGTWTEGGFL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00771 482 CDD ArfGap_ArfGap1 4 118 - -
Phco6g00771 482 MobiDBLite consensus disorder prediction 119 242 - -
Phco6g00771 482 MobiDBLite consensus disorder prediction 161 199 - -
Phco6g00771 482 Pfam Putative GTPase activating protein for Arf 6 98 IPR001164 GO:0005096
Phco6g00771 482 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Phco6g00771 482 MobiDBLite consensus disorder prediction 381 396 - -
Phco6g00771 482 MobiDBLite consensus disorder prediction 443 457 - -
Phco6g00771 482 MobiDBLite consensus disorder prediction 344 380 - -
Phco6g00771 482 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Phco6g00771 482 MobiDBLite consensus disorder prediction 401 418 - -
Phco6g00771 482 MobiDBLite consensus disorder prediction 419 434 - -
Phco6g00771 482 FunFam ADP-ribosylation factor GTPase-activating protein 1 130 - -
Phco6g00771 482 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 85 IPR001164 GO:0005096
Phco6g00771 482 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Phco6g00771 482 MobiDBLite consensus disorder prediction 330 482 - -
Phco6g00771 482 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Phco6g00771 482 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Phco6g00771 482 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Phco6g00771 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 397 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00771 Phco-Chr6 7647640 7650757 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00771 6 7647640 7650757 Phco6g00771 6 7647640 7650757 ECH
Phco2g01944 2 50138724 50153876 Phco6g00771 6 7647640 7650757 PCT