Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01944 ATGGCTTCGCGGCGGCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTCGACTGTTCCCAGAAGAATCCGCAATGGGCGTCGGTGTCGTACGGAATCTTTATGTGCTTAGAGTGCTCTGGCAAGCACCGCGGTCTCGGCGTCCACATCTCCTTCGTTCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGAGGCAACGATAGACTCAACTCCTTTCTCGCGCAATACGGCATCGCCAAGGAAACCGACATCGTCGCCAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCCGACGGGCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGACCATTCGCTCCTCAGTCTCCAAGGGAAAGCCGCCCCTAGCCACCAGCAACAACGGCGGATGGGATAATTGGGACGCAGACGATGGGATCGGATCGGCGAGGGCGGGTTCCGATCTGCGGCGGAACCAGTCCACCGGCGATGTAAGGGGGTTCGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCGACGGAGGATATGTACACTCGCGTACAGCTGGAAGCCTCTGCTGCCAATAAAGAAGATTTCTTCGCGAGGAGGAGGGCGGAGAATGAGTTGCGACCGGAGGGGCTTCCGCCTTCGCAGGGTGGCAAGTACGTTGGGTTTGGATCAGGCCCCGCCCCGAGCCAAAGGGTTAATCAGCAAAACGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTGTCGTTGGCTGCTGCTTCTGCGGCTCAGTCTGCTGCCAATGTTGTTCAAGCCGGGACAAAAGAGATCTCTGCTAAGGTAAAAGAGGGTGGTTACGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACATAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACACAAAAGGTTGAGGAATACACTAGAGATAATCCAAATGGGACATCTGATAACTGGAAACGAAATGAAACTGATAAAAACGGTTTCTATCAGGAGTTTAATCAAGAGAACAAAGGCTGGAATTCTTCTGGCAGAGAAGGACAACACTCTACGGGTAGAAAAACTAATTCAAGCTCTTGGGACGATTGGGACCACGAAGATTCTAGGAAGGAAGAACCTGCAAAAGGATCGTCTCATCAGTCATCAGGCGGGCAATCTGATACTTGCAACTCTAGCTCTTGGGATGACTGGGACCATGAAGATACAAGGAAGAAAGAAGCAGCTAAAGGGTCAGCTTCCCATAGCAGTGATGGTTGGGCTGGTTGGGATAATGCCAAAGATGAAGGATTTGACGATTTCTATGGGAATGCATCTAATAATAAAGCTGTTGGTCATAATGAGAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCTCTAA 1458 0.5247 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDRLNSFLAQYGIAKETDIVAKYNSNAASVYRDRIQAIADGRPWRDPPVVKETIRSSVSKGKPPLATSNNGGWDNWDADDGIGSARAGSDLRRNQSTGDVRGFGGGGSVARSKSTEDMYTRVQLEASAANKEDFFARRRAENELRPEGLPPSQGGKYVGFGSGPAPSQRVNQQNDYLSVVSQGFGKLSLAAASAAQSAANVVQAGTKEISAKVKEGGYDYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMATQKVEEYTRDNPNGTSDNWKRNETDKNGFYQEFNQENKGWNSSGREGQHSTGRKTNSSSWDDWDHEDSRKEEPAKGSSHQSSGGQSDTCNSSSWDDWDHEDTRKKEAAKGSASHSSDGWAGWDNAKDEGFDDFYGNASNNKAVGHNEKAGVAWTGGGFL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01944 485 MobiDBLite consensus disorder prediction 129 189 - -
Phco2g01944 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 408 IPR044519 GO:0005096|GO:0016192
Phco2g01944 485 MobiDBLite consensus disorder prediction 419 437 - -
Phco2g01944 485 MobiDBLite consensus disorder prediction 361 383 - -
Phco2g01944 485 FunFam ADP-ribosylation factor GTPase-activating protein 1 128 - -
Phco2g01944 485 CDD ArfGap_ArfGap1 2 116 - -
Phco2g01944 485 MobiDBLite consensus disorder prediction 403 418 - -
Phco2g01944 485 MobiDBLite consensus disorder prediction 384 402 - -
Phco2g01944 485 Pfam Putative GTPase activating protein for Arf 4 102 IPR001164 GO:0005096
Phco2g01944 485 MobiDBLite consensus disorder prediction 361 485 - -
Phco2g01944 485 MobiDBLite consensus disorder prediction 135 149 - -
Phco2g01944 485 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Phco2g01944 485 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Phco2g01944 485 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Phco2g01944 485 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Phco2g01944 485 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Phco2g01944 485 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Phco2g01944 485 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 109 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01944 Phco-Chr2 50138724 50153876 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01944 2 50138724 50153876 Phco2g01944 2 50138724 50153876 ECH
Phco2g01944 2 50138724 50153876 Phco6g00771 6 7647640 7650757 PCT