Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00738 ATGGCTACTCAAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCCTGGGAACCCAACAAGCCATTGACCATCGAGGACGTTCAGGTGGCTCCGCCGCAGAATGGAGAGGTCCGAATCCAAATTCTCTACACTGCTCTCTGTCACACCGATGCTTACACGTGGAGCGGCAAGGATCCAGAAGGTCTTTTTCCATGTATACTTGGTCATGAGGCTGCAGGAATTGTGGAAAGTGTTGGAGAAGGTGTCACTGAAGTTCAGCCTGGTGATCATGTGATCCCTTGTTACCAGGCTGAGTGTGGAGAGTGCAAGTTTTGCAAATCAGGGAAAACCAATCTGTGTGGCAAAGTTCGATCTGCCACTGGAGTCGGGGTCATGCTGAGCGATTGCAAGAGTCGTTTCTCGGTTAATGGAAAACCCCTCTATCATTTCATGGGAACCTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGATCCCAAAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGTGGAGTTCCAACTGGTCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAAAAGGGGTCAATTGTTGCTATTTTTGGCCTAGGAACTGTCGGGCTTGCTGTAGCAGAGGGTGCAAAAGCTGTTGGTGCATCACGGATTATTGGCATAGATATTGATAGCAATAAGTTTGAAAGAGCAAAGGACTTTGGAGTCACCGAATTTCTTAATCCAAAAGAACATGAGAAACCAATTCAGCAGGTCATAGCTGATCTCACAGATGGTGGAGTTGATTATAGTTTTGAGTGTATTGGAAATGTCTCTGTGATGAGAGCTGCTTTGGAATGCTGCCATAAGGGTTGGGGGATATCAGTTATTGTGGGGGTTGCAGCTTCAGGTCAGGAAATATGTACTCGACCTTTCCAGTTGGTGACTGGGCGAGTTTGGAAAGGAACAGCATTTGGTGGCTTCAAGAGCCGATCACAAGTGCCTTGGCTTGTGGAGAAGTACATGAAGAAGGAAATCAAGGTTGATGAGTACGTCACCCACAGCTTGCCTCTTGCTGAGATCAATAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTGCAATGCATGAATGA 1140 0.4684 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQNGEVRIQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDCKSRFSVNGKPLYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEKGSIVAIFGLGTVGLAVAEGAKAVGASRIIGIDIDSNKFERAKDFGVTEFLNPKEHEKPIQQVIADLTDGGVDYSFECIGNVSVMRAALECCHKGWGISVIVGVAASGQEICTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYMKKEIKVDEYVTHSLPLAEINKAFDLMHEGGCLRCVLAMHE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00738 379 Pfam Zinc-binding dehydrogenase 206 328 IPR013149 -
Phco6g00738 379 Gene3D - 13 372 - -
Phco6g00738 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Phco6g00738 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Phco6g00738 379 SUPERFAMILY GroES-like 3 197 IPR011032 -
Phco6g00738 379 Gene3D - 182 320 - -
Phco6g00738 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Phco6g00738 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Phco6g00738 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Phco6g00738 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Phco6g00738 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Phco6g00738 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Phco6g00738 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00738 Phco-Chr6 7314218 7321832 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00738 6 7314218 7321832 Phco6g00738 6 7314218 7321832 ECH
Phco2g01919 2 49800644 49806121 Phco6g00738 6 7314218 7321832 PCT