Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01919 ATGGGATCTATTGTCAAAGTATTGATTTGTGTGGGTCTCATCTCATTCCTTTCAATGGCAACTCAAGGTCAAGTCATCACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCATTGACTATTGAAGACGTCCAGGTGGCTCCGCCTCAGGCCGGCGAGGTTCGAGTTCAAATCCTCTACACCGCTCTCTGTCACACCGATGCTTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCCTGTATTCTCGGCCATGAAGCTGCTGGGATCGTGGAGAGTGTTGGAGAAGGTGTTACTGATGTTAAGCCCGGGGATCATGTTATTCCCTGTTACCAGGCTGAGTGTGGGGAGTGCAAGACTTGCAAATCAGGGAAGACCAACCTTTGCGCCAAGGTTCGCTCTGCCACTGGAGTTGGGGTCATGCTCAATGATGGCAAGAGTCGGTTCTCGATTAATGGAAAGCCCATTTATCATTTCATGGGAACCTCCACTTTTAGTCAATACACTGTTGTCCATGATGTTAGTGTAGCTAAGATTGACCCCATAGCTCCTCTGGACAAAGTTTGTCTTCTCGGATGTGGTGTTTCAACGGGCCTTGGAGCTGTGTGGAACACTGCAAAGGTTGAGCCAGGGACAATTGTTGCTATTTTTGGCCTTGGGACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCCCGGATTATTGGCATAGATATTGATAGCAAGAAATTTGATACTGCGAAGAACTTTGGAGTCACCGAGTTTATAAATCCAAATGAACATGATAAACCAATTCAGCAGGTCATAATTGATCGTACAGATGGTGGAGTTGATTATAGCTTTGAGTGTATTGGAAATGTTTCTGTGATGAGAGCTGCTTTGGAATGCTGCCACAAGGGCTGGGGGACATCAGTTATCGTGGGTGTTGCAGCATCAGGTCAGGAAATATCAACCCGACCTTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACTGCTTTCGGTGGCTTCAAGAGCAGGTCACAGGTTCCTTGGCTCGTAGACAAGTACCTGAAGAAGGAAATCAAGGTTGATGAATACATTACCCACACTTTGACTCTCTCTGAGATCAACAAGGCTTTTGATCTTTTGCATGAAGGTGGATGCCTTCGTTGTGTGCTTTCTACACAAGAATGA 1194 0.4765 MGSIVKVLICVGLISFLSMATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQILYTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPCYQAECGECKTCKSGKTNLCAKVRSATGVGVMLNDGKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLDKVCLLGCGVSTGLGAVWNTAKVEPGTIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDTAKNFGVTEFINPNEHDKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHEGGCLRCVLSTQE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01919 397 Gene3D - 31 390 - -
Phco2g01919 397 Gene3D - 200 338 - -
Phco2g01919 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 186 359 IPR036291 -
Phco2g01919 397 Pfam Alcohol dehydrogenase GroES-like domain 53 180 IPR013154 -
Phco2g01919 397 CDD alcohol_DH_class_III 26 393 IPR014183 GO:0006069|GO:0008270|GO:0051903
Phco2g01919 397 FunFam S-(hydroxymethyl)glutathione dehydrogenase 31 219 - -
Phco2g01919 397 SUPERFAMILY GroES-like 21 215 IPR011032 -
Phco2g01919 397 PANTHER ALCOHOL DEHYDROGENASE 23 393 - -
Phco2g01919 397 Pfam Zinc-binding dehydrogenase 224 348 IPR013149 -
Phco2g01919 397 SUPERFAMILY GroES-like 344 393 IPR011032 -
Phco2g01919 397 FunFam S-(hydroxymethyl)glutathione dehydrogenase 200 338 - -
Phco2g01919 397 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 28 393 IPR014183 GO:0006069|GO:0008270|GO:0051903
Phco2g01919 397 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 86 100 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01919 Phco-Chr2 49800644 49806121 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01919 2 49800644 49806121 Phco2g01919 2 49800644 49806121 ECH
Phco2g01919 2 49800644 49806121 Phco6g00738 6 7314218 7321832 PCT