Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00708 ATGCTGCTAAAGTTGTACCCTGTTGTATCAGAGAGAGAGAGAGAGCAGAGAATGAGTTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTCTCCTTCAAGATCTTGTTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAACTCCGTTGAAGATATTGCCCCCACAATCGGTGTTGATTTTAAGATCAAGGTGTTCACAGTAGGTGGGAAGAGATTGAAACTGACTATTTGGGACACAGCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTGTTTATGATGTAACGAGAAGAGACACCTTCACAAACTTATCAGAAGTGTGGTCTAAAGAAGTGGAACTATATTCAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGACAGAGATTCTGAAAGGGTTGTGACTAAAGAAGAGGGTTTAACACTTGCCGAAGAGTTGGGATGTCTGTTTTTTGAATGTAGTGCCAAAACTAGAGAAAATGTGGACCGATGCTTCGAGGAACTTGCACAAAAGATAATGGAAGTTCCTAGTCTTCTGGAAGAAGGATCTACAGCAGTGAAAAGGAATGTTCTAAAGCAACAACAGGAACCTCAAGCATCCGAAATTGGTGGCTGTTGCTCTTAA 687 0.4192 MLLKLYPVVSEREREQRMSSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSVEDIAPTIGVDFKIKVFTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSEVWSKEVELYSTNQNCVKMLVGNKVDRDSERVVTKEEGLTLAEELGCLFFECSAKTRENVDRCFEELAQKIMEVPSLLEEGSTAVKRNVLKQQQEPQASEIGGCCS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00708 228 NCBIfam small GTP-binding protein domain 32 188 IPR005225 GO:0005525
Phco6g00708 228 Gene3D - 25 227 IPR027417 -
Phco6g00708 228 FunFam Ras-related protein RABC1 25 227 - -
Phco6g00708 228 PRINTS Transforming protein P21 ras signature 171 193 - -
Phco6g00708 228 PRINTS Transforming protein P21 ras signature 54 70 - -
Phco6g00708 228 PRINTS Transforming protein P21 ras signature 32 53 - -
Phco6g00708 228 PRINTS Transforming protein P21 ras signature 72 94 - -
Phco6g00708 228 PRINTS Transforming protein P21 ras signature 136 149 - -
Phco6g00708 228 PANTHER RAS-RELATED PROTEIN RAB 31 210 - -
Phco6g00708 228 CDD Rab18 32 193 - -
Phco6g00708 228 SMART rab_sub_5 32 196 - -
Phco6g00708 228 SMART ras_sub_4 29 196 - -
Phco6g00708 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 218 IPR027417 -
Phco6g00708 228 SMART ran_sub_2 37 223 - -
Phco6g00708 228 SMART arf_sub_2 14 197 - -
Phco6g00708 228 SMART rho_sub_3 34 196 IPR001806 GO:0003924|GO:0005525
Phco6g00708 228 ProSiteProfiles small GTPase Rho family profile. 25 194 - -
Phco6g00708 228 ProSiteProfiles small GTPase Arf family profile. 25 193 - -
Phco6g00708 228 ProSiteProfiles small GTPase Ras family profile. 23 228 IPR001806 GO:0003924|GO:0005525
Phco6g00708 228 Pfam Ras family 33 194 IPR001806 GO:0003924|GO:0005525
Phco6g00708 228 ProSiteProfiles small GTPase Rab1 family profile. 27 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00708 Phco-Chr6 7033606 7037230 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00708 6 7033606 7037230 Phco6g00708 6 7033606 7037230 ECH
Phco2g02075 2 51501060 51503494 Phco6g00708 6 7033606 7037230 PCT