Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02075 ATGAGTTCGTCCTCAGCTCAGAGCAGCGGCTATGATCTCTCTTTCAAGATCTTGTTGATCGGAGATTCTGGGGTGGGAAAAAGTAGCCTACTTGTCAGCTTCATTTCAAGTTCTGTTGAAGATCTTTCCCCCACCATTGGTGTTGATTTTAAGATCAAAACGCTCATAGTAGGTGGCAAGAGATTGAAATTAACGATTTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTCTAACCAGCTCTTACTATAGAAAAGCACAAGGAATCATTCTCGTTTATGATGTGACGAGGCGAGAAACCTTTACAAACTTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTACTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATACTGAAAGGGCTGTGAGCAGAGAAGAGGGTTTATCCCTTGCCAAAGAATTGGGGTGTTTGCTTCTTGAATGCAGTGCTAAAACTCGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCCCCCAGTCTTTTGGAAGAGGGATCAACAGCAGTTAAAAGGAGTGTTTTAAAACAGAAACAAGAGCCCCAAGCTTCCCAAAATAGTGGTTGTTGCTCTTAA 636 0.4261 MSSSSAQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLSPTIGVDFKIKTLIVGGKRLKLTIWDTAGQERFRTLTSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRDTERAVSREEGLSLAKELGCLLLECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRSVLKQKQEPQASQNSGCCS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02075 211 SMART ras_sub_4 12 179 - -
Phco2g02075 211 SMART rab_sub_5 15 179 - -
Phco2g02075 211 SMART arf_sub_2 1 180 - -
Phco2g02075 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Phco2g02075 211 PANTHER RAS-RELATED PROTEIN RAB 14 197 - -
Phco2g02075 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Phco2g02075 211 Gene3D - 8 210 IPR027417 -
Phco2g02075 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 198 IPR027417 -
Phco2g02075 211 SMART ran_sub_2 20 210 - -
Phco2g02075 211 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Phco2g02075 211 CDD Rab18 15 176 - -
Phco2g02075 211 FunFam Ras-related protein RABC1 8 210 - -
Phco2g02075 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Phco2g02075 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Phco2g02075 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Phco2g02075 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Phco2g02075 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Phco2g02075 211 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Phco2g02075 211 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
Phco2g02075 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Phco2g02075 211 NCBIfam small GTP-binding protein domain 15 171 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02075 Phco-Chr2 51501060 51503494 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02075 2 51501060 51503494 Phco2g02075 2 51501060 51503494 ECH
Phco2g02075 2 51501060 51503494 Phco6g00708 6 7033606 7037230 PCT