Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00701 ATGTTCCAAACAACCTACATTTTGCTCTTCTTCTCCGTTCTGCCCTCGTTTTTACCTCATGGAACAGCAAAGCTCAACCTCACTCTCCCAGGGCAACATCCAGACCCGGAAGCTGTTGCCGCAGAAGTTCATAGGAGGGTGAATGCTTCAATGGGAAGAAGGGAAATGCTGGGGTTGTCAGAGAAAGAGGTGGCGTCATGTTTCACAGGTAACCCCATTGATGATTGTTGGAAGTGTGACCCAGATTGGGCCAACAACAGGCAGAGGCTAGCTGATTGTGCAATTGGGTTTGGGCAGAACGCAAAGGGTGGGAAAGGTGGGCAATTTTACATAGTCACTGATTCATCTGATGAGGACGCTGTGAACCCAAAACCAGGAACACTTAGATATGCAGTGATACAGAATGAGCCGCTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAACTCATTTTCAATAGCTACAAAACCATTGATGGGCGTGGCGCTGATGTGCACATTGTGGGTGGAGGCTGCATCACTCTTCAGTATATTAGCAATGTCATTATACACAACATTCACATCCACCATTGCCATCCCTCTGGTAACACTAACGTGCGGTCGAGTCCAGAGCACTACGGCTACCGAACGGAATCAGACGGCGACGGAGTCTCGATCTTCTCGTCGCGCGACATCTGGATCGATCACTGCACGCTATCGCGGTGCAAGGACGGTCTGATAGACGCGGTGATGGGTTCGACCGCAATAACGATCTCGAACAACCACTTTTCGCACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCTGCCGGACTCGGCCATGCAGGTGACCATCGCGTTCAACCACTTCGGGGAGGATCTGGTGCAGCGCATGCCGCGTTGCAGACTAGGGTACATCCACGTGGTGAACAACGACTTCACGCGATGGGAGATGTACGCGATCGGGGGAAGTGCGAGGCCTACGATTAACAGCCAGGGAAACCGCTACACTGCGCCGGAGGATGCGTACGCGAAGCAGATTACGAAGAGGCTGGACGCCGGAGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGAGACGTCATGCTGAACGGCGCGTTTTTCGTGGCCTCAGGAGGTGAGACTGGAGCTGCCTACCAAAATGCGTACAGCGTTGAGCCTAAGAACGTCGATCGCATCTCGCTCCTCACCATGTCCGCTGGTGTTCTCGGCGTTGCAAGGGACAATAATCTGGGAATGTGGACGAGAGGACCCAACGATGGTGCAGTATATTTTTCAGATACAGGCCCAGAATACACAGATGACATGTCCCGGAGTACAATGCCGCTGCCACCTTCACCTACTTTCACTCTTCTATCTGCATTTCTTGCTTTCTTGTGCCTCTTATTTCATACAGTTACCTTAACAACACTTCTATAG 1443 0.5198 MFQTTYILLFFSVLPSFLPHGTAKLNLTLPGQHPDPEAVAAEVHRRVNASMGRREMLGLSEKEVASCFTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDEDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGVSIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEDLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSARPTINSQGNRYTAPEDAYAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGETGAAYQNAYSVEPKNVDRISLLTMSAGVLGVARDNNLGMWTRGPNDGAVYFSDTGPEYTDDMSRSTMPLPPSPTFTLLSAFLAFLCLLFHTVTLTTLL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00701 480 PANTHER PECTATE LYASE 18-RELATED 32 414 IPR045032 GO:0030570
Phco6g00701 480 SMART amb_all 145 342 IPR002022 -
Phco6g00701 480 Gene3D - 70 412 IPR012334 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Phco6g00701 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Phco6g00701 480 Pfam Pectate lyase 154 334 IPR002022 -
Phco6g00701 480 FunFam Pectate lyase 70 412 - -
Phco6g00701 480 SUPERFAMILY Pectin lyase-like 58 389 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00701 Phco-Chr6 6992097 6994563 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00701 6 6992097 6994563 Phco6g00701 6 6992097 6994563 ECH
Phco2g02069 2 51437296 51439560 Phco6g00701 6 6992097 6994563 PCT