Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02069 ATGCTCCAGACAACCTGCATTTTCCTACTCTCACTTCTGAGTTCCTTTTCACCACTTGGAACAGCAATGCTTAACCTAACTCTTCCAGGGGCACATCCAGACCCCGAAGCTGTTGCCCACGAAGTTCATAGGAAGGTTAATGCTTCAATGGCAAGAAGGGAAATGTTATCAGTGTCAGAGAGAGACGAGTCTTCGTGTCTAACGGGGAACCCCATTGATGATTGTTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTAGCCGACTGCGCCATTGGGTTCGGTCAGTATGCAAAGGGAGGGAAAGGTGGTGAATTTTACGTGGTCACTGATTCCTCTGACAAGGACCCTGTGAACCCAAAACCCGGGACGCTGAGATACGCTGTGATACAGAACGAGCCACTGTGGATCGTCTTCCCCAGTAACATGATGATTAAGCTGTCCCAGGAGCTGATTTTTAACAGCTACAAGACCATTGATGGACGCGGTGCTGATGTGCACATCGTGGGAGGAGGCTGCATTACTCTGCAGTATATAAGCAATGTCATCATACACAACATTCACATCCATCATTGCCATCCCTCAGGGAACACGAACGTTCGGTCAAGCCCGGAGCACTACGGATTCCGGACAGAATCGGACGGGGATGGGATATCGATATTCGGGTCGAAGGACATATGGATCGACCACTGCACGCTGTCGCGGTGCAAGGACGGACTGATAGACGCCGTGATGGGGTCGACGGGGATAACCATCTCGAACAACTACCTATCCCACCACAACGAGGTCATGCTCCTGGGCCACAGCGACGACTACCTCCCAGACTCCGGCATGCAGGTAACCATCGCCTTCAACCACTTCGGGGAGAAGCTGGTCCAGAGAATGCCTCGCTGCCGGAGGGGCTACATCCATGTCGTCAACAACGACTTCACCGAGTGGGAGATGTACGCCATCGGGGGAAGCGGCGAACCCACCATTAACAGCCAGGGGAACCGGTACATGGCACCCCAAAACCCCTTCGCCAAGGAGGTTACCAAACGAGTGGAGACCCAACAGTCGAAGTGGAAGGGCTGGAACTGGAGGTCCGAGGGTGACATTTTACTCAATGGTGCCTTCTTTGTTGCGTCTGGCGAAGGACTCGAGGTTAAGTACGAGAAGGCCTACAGCGTTGAACCTAAGTCCGCCGATCGTATCTCTCTTCTCACCATGTCCTCCGGTGTTCTTGGAAATGCCAGGGACAACAACCTCGGAATGTGGAGCAGAGGACCTGGTGATGACTCTATGGAGTCCGGCATGGTATACACCGACGAAATGTCCACCGCCGCACCAATCATTCTACCGTCTCTTTTTCTTCTCTTGTTGTCTTCCACCATACTCTTGACAGTTATTCTATAG 1401 0.5261 MLQTTCIFLLSLLSSFSPLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASMARREMLSVSERDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDKDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPQNPFAKEVTKRVETQQSKWKGWNWRSEGDILLNGAFFVASGEGLEVKYEKAYSVEPKSADRISLLTMSSGVLGNARDNNLGMWSRGPGDDSMESGMVYTDEMSTAAPIILPSLFLLLLSSTILLTVIL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02069 466 SMART amb_all 144 341 IPR002022 -
Phco2g02069 466 FunFam Pectate lyase 69 411 - -
Phco2g02069 466 SUPERFAMILY Pectin lyase-like 64 394 IPR011050 -
Phco2g02069 466 Pfam Pectate lyase 153 329 IPR002022 -
Phco2g02069 466 PANTHER PECTATE LYASE 18-RELATED 30 412 IPR045032 GO:0030570
Phco2g02069 466 Gene3D - 69 411 IPR012334 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Phco2g02069 466 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02069 Phco-Chr2 51437296 51439560 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02069 2 51437296 51439560 Phco2g02069 2 51437296 51439560 ECH
Phco2g02069 2 51437296 51439560 Phco6g00701 6 6992097 6994563 PCT