Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00627 ATGCATACCGATCAACAATATGTGAACCTTGGTAGAAGTACCACTTCAGACAATGGTTCTTTTCTTTATCCTTTGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCGCCAAGGTCAAATGGATATGCCTCCACAAGTCTCAACATTGAAGCACCCCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTCTGCATTCATCAAGTGGCGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCCTCTAGTTCCAATTATGACAGACAATCATTTCCTGCTGCTGATGGGGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTACAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCCGAAAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTGAATATGACACCCGATCATGTGAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGATAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATTCAACTTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACTGGTCCCCAAATGGACCATTCTAGCATGGTAGATCTTTCAACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCAGCCAAATGAGTGTATGTCCTGCTCATGGAAGGGTGCCACCATCAGATGCAAATGCTTTTAATCATGAGGCAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATATTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAATAATAGTCAGGCTCAACCTGCAAGAGGAGTTCACAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGGTTCTTCCAGCTTGCGCTTGGGTCGCATGACGCCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACAACAATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGCTTGATCAGCATAGAGAGATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATATGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCTGAGCCAAGTCAAGAAGACGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGATGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAAAAAGTGGTTATCTATGAAGAAAGTGTGTCCTATCTGCAAAGCTTCTGCTTTACCTGAGGAAACGAAGGATAAATAA 1602 0.4257 MHTDQQYVNLGRSTTSDNGSFLYPLENMSIDSISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLHSSSGGMFYAVSENYVHQPSSSNYDRQSFPAADGGFIDLTMGNGRGPHKRKSPGVPSVCERGSTSRCFNATSANAADRPTSSELRPEKPNMDSLYMPWDHVNMTPDHVNMTPDHVNMTPSFRGRGLSIRGDSSLRNVRSRSTLDLEFNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSSQMSVCPAHGRVPPSDANAFNHEASHFLVGSGSSNAPVDIGGFHNEFGTSRNPTAPQSFHNNSQAQPARGVHSNYSQRSTPTFRGSSSLRLGRMTPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEGFMIVDRTSLYGRNMLDQHREMRMDIDNMSYEELLALGERIGHVSTGLSEDMISKYLTETIYCSSEPSQEDEACAICLEEYKNVDDVGTLKACGHDYHVSCIKKWLSMKKVCPICKASALPEETKDK 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00627 533 CDD RING-H2_RNF24-like 478 525 - -
Phco6g00627 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 526 IPR013083 -
Phco6g00627 533 SUPERFAMILY RING/U-box 470 525 - -
Phco6g00627 533 MobiDBLite consensus disorder prediction 324 354 - -
Phco6g00627 533 Pfam Ring finger domain 479 522 IPR001841 -
Phco6g00627 533 SMART ring_2 480 521 IPR001841 -
Phco6g00627 533 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Phco6g00627 533 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 117 526 IPR045191 GO:0061630
Phco6g00627 533 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 445 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00627 Phco-Chr6 6233761 6236100 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00627 6 6233761 6236100 Phco6g00627 6 6233761 6236100 ECH
Phco2g02016 2 50829742 50837170 Phco6g00627 6 6233761 6236100 PCT