Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02016 ATGTCCCGATTTTTAGTTACGACTTCCTCCCTTGCCTTGTGTAAGAATGGGAAAATCTTCTCCCCCTGTGTTTTTCTCATGTTTTGTTGTCTTTATGTGTCATCAGGCGCGCAGTTCCTATCTTCTAGTATAATGTTTTGTATATCGGATGCTTTGTCAGATATTGTTGGTCTGCTTTTTGAAGAAGGTATAATGTGCCAAAGAATATCAGTTAGGAAGAATTGTGTTGGCCTTGTTCAGCTGCATTGTGTCCTTTTAGGTCATGGTCATCCTTCTTCTGGGATTGGATGGTTGTTTAGCGTGAAATGCCCTAGCTATTGTTTTGAGGATATTGTGGCAATAGACTGGTCACATCCAATGTTTAGCGATGCAAGCTGTAACTGGCATACCATAGATGGAGGAGGCTTCTATAGTGATATGCATACTCTCTTAAATGACGTAAACTGCCCTCTATGTCAACTAGAAGGTGCTCCTTCTGTATCAGTGGATAGAGGCATGGGTGGCTTCAATATTCTTCCTAGTCTTCCTGCCCATGACGCTCTACTTGCAAGATTCCAAGTGACAGTTATGGGGCATAGGCACGTATATAACACATCTCCATTGTACGAGGGTGAGCCTGACCCGAACTGGAATCATATGCACATTGATCAACACTATGTGCACCTTGGTAGAACTAGCACTTCCGAGAATGGTTCTTTTATTTATCCTGCGGACAATATGTCTATAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCACAACCTTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCGTCTAGTGCTGGAGCGTTCTTTACAGTGTCCGATAATCATGTATTCCAACCTTCTTCTTCCAATTATGACAGGCATACATTTCCTGTTGATAGTGGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTATGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGAAGTTCAACTGATCTTCCTATATCTTCGGAAGTATGGCAGGAGAAGCCAAATATAGATTCTCAATATATTCCCTGGGATCATTTTACTATGACACCCTCATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGAGTTCTTTGCGGAATGTGAGGAGCCGCCCTGCACTTGATTTGGATTCCAATCCATCTAGAACCCATTTATCAACTAATCATTCACACAATTCCTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTGCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGACACAAGTCATTTCCTTGTTGGAAGTGGTGCTACTGTTAGCAATGCTTCTGTAGATGTTGGGTGCTTCCATCATGAATTCGGTACAAGCAGAAATCCTGCACCTCCTCTAAGTTTTCAAAATAATCAAACTCAGACTGCCAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAACATTTAGGGCTTCTTCAGGCTTGCGCATGGGACATGTGACATCCTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAACACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGATCAAGAATTTCAAGTCAAAGATATCGTTCGTTGACTGAGGAGAGTGGTCTCACCGAACGATTTGCCTCGGAGGGTATCTTGGTTGTTGAGCGTGCGTCGGTGTATGCTTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTACGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTAAACACAGGGGTCTCTGAGGATTTGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGTGTAATATGTCTGGAAGATTACAAGAACATGGATGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGCCCTATCTGCAAAGCATCTGCTTTGGCTGAGGATACAAGGGATAAATAA 2220 0.4261 MSRFLVTTSSLALCKNGKIFSPCVFLMFCCLYVSSGAQFLSSSIMFCISDALSDIVGLLFEEGIMCQRISVRKNCVGLVQLHCVLLGHGHPSSGIGWLFSVKCPSYCFEDIVAIDWSHPMFSDASCNWHTIDGGGFYSDMHTLLNDVNCPLCQLEGAPSVSVDRGMGGFNILPSLPAHDALLARFQVTVMGHRHVYNTSPLYEGEPDPNWNHMHIDQHYVHLGRTSTSENGSFIYPADNMSIDSISFPSHWNSSTRSNGYASSGHNLDVPPHQPDASGTSNDHFVHSSSAGAFFTVSDNHVFQPSSSNYDRHTFPVDSGFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSTDLPISSEVWQEKPNIDSQYIPWDHFTMTPSFRGTGLSIKGESSLRNVRSRPALDLDSNPSRTHLSTNHSHNSYPTLPPVDHSSLVDVSGQTSATLTRDWSQMNISPANGRVLLPDTSAFGLDTSHFLVGSGATVSNASVDVGCFHHEFGTSRNPAPPLSFQNNQTQTARGIQSNYSQRSTPTFRASSGLRMGHVTSLDEGLPMVAESYSSRHPRPLNTLGWRNGDRNGRSRISSQRYRSLTEESGLTERFASEGILVVERASVYASRNMLDQHREMRMDIDNMSYEDLLALGERIGNVNTGVSEDLFSKCLTETIYCSSEQSQDEGNCVICLEDYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALAEDTRDK 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02016 739 SUPERFAMILY RING/U-box 676 731 - -
Phco2g02016 739 SMART ring_2 686 727 IPR001841 -
Phco2g02016 739 Pfam Ring finger domain 685 728 IPR001841 -
Phco2g02016 739 MobiDBLite consensus disorder prediction 574 594 - -
Phco2g02016 739 MobiDBLite consensus disorder prediction 523 542 - -
Phco2g02016 739 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 651 732 - -
Phco2g02016 739 CDD RING-H2_RNF24-like 686 731 - -
Phco2g02016 739 MobiDBLite consensus disorder prediction 256 282 - -
Phco2g02016 739 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 279 732 IPR045191 GO:0061630
Phco2g02016 739 MobiDBLite consensus disorder prediction 400 433 - -
Phco2g02016 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 732 IPR013083 -
Phco2g02016 739 MobiDBLite consensus disorder prediction 411 433 - -
Phco2g02016 739 ProSiteProfiles Zinc finger RING-type profile. 686 728 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02016 Phco-Chr2 50829742 50837170 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02016 2 50829742 50837170 Phco2g02016 2 50829742 50837170 ECH
Phco2g02016 2 50829742 50837170 Phco6g00627 6 6233761 6236100 PCT